From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.434347534848] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
FET3 |
|
|
|
FTR1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
high-affinity iron ion transport | 3.0316E-7 | 2 | 4 | 2 | 6292 |
iron ion transmembrane transport | 5.0527E-7 | 2 | 5 | 2 | 6292 |
iron ion transport | 7.7306E-6 | 2 | 18 | 2 | 6292 |
di-, tri-valent inorganic cation transport | 2.5061E-5 | 2 | 32 | 2 | 6292 |
ion transmembrane transport | 2.5061E-5 | 2 | 32 | 2 | 6292 |
transition metal ion transport | 4.5626E-5 | 2 | 43 | 2 | 6292 |
metal ion transport | 8.3521E-5 | 2 | 58 | 2 | 6292 |
transmembrane transport | 1.7194E-4 | 2 | 83 | 2 | 6292 |
cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
response to copper ion | 1.2712E-3 | 2 | 4 | 1 | 6292 |
response to metal ion | 5.7138E-3 | 2 | 18 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
iron ion transmembrane transporter activity | 3.3348E-6 | 2 | 12 | 2 | 6292 |
transition metal ion transmembrane transporter activity | 1.9099E-5 | 2 | 28 | 2 | 6292 |
di-, tri-valent inorganic cation transmembrane transporter activity | 3.0063E-5 | 2 | 35 | 2 | 6292 |
metal ion transmembrane transporter activity | 5.2295E-5 | 2 | 46 | 2 | 6292 |
inorganic cation transmembrane transporter activity | 2.5516E-4 | 2 | 101 | 2 | 6292 |
cation transmembrane transporter activity | 3.4879E-4 | 2 | 118 | 2 | 6292 |
ion transmembrane transporter activity | 5.3483E-4 | 2 | 146 | 2 | 6292 |
oxidoreductase activity, oxidizing metal ions, oxygen as acceptor | 6.3568E-4 | 2 | 2 | 1 | 6292 |
ferroxidase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
oxidoreductase activity, oxidizing metal ions | 3.811E-3 | 2 | 12 | 1 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |