From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.575730907571] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
EMP24 |
|
|
|
VRG4 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ER to Golgi transport vesicle | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
lipid glycosylation | 3.1786E-4 | 2 | 1 | 1 | 6292 |
nucleotide-sugar transport | 1.2712E-3 | 2 | 4 | 1 | 6292 |
maintenance of protein localization in endoplasmic reticulum | 2.224E-3 | 2 | 7 | 1 | 6292 |
protein retention in ER lumen | 2.224E-3 | 2 | 7 | 1 | 6292 |
lipid modification | 7.6148E-3 | 2 | 24 | 1 | 6292 |
maintenance of protein location in cell | 7.9314E-3 | 2 | 25 | 1 | 6292 |
maintenance of protein location | 8.248E-3 | 2 | 26 | 1 | 6292 |
maintenance of location in cell | 8.5646E-3 | 2 | 27 | 1 | 6292 |
maintenance of location | 8.8811E-3 | 2 | 28 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
nucleotide-sugar transmembrane transporter activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
carbohydrate transmembrane transporter activity | 9.5139E-3 | 2 | 30 | 1 | 6292 |