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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.057] [SVM Score: 0.786592729592]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
CNM67
  • outer plaque of spindle pole body
  • spindle pole body
    		•
  • mitotic spindle organization
  • microtubule nucleation
    		•
  • structural constituent of cytoskeleton
    		•
    SPC105
  • mitochondrion
  • spindle pole body
    		•
  • microtubule nucleation
    		•
  • structural constituent of cytoskeleton
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    microtubule organizing center 9.8679E-5 2 63 2 6292
    spindle pole body 9.8679E-5 2 63 2 6292
    spindle pole 1.151E-4 2 68 2 6292
    spindle 1.9786E-4 2 89 2 6292
    microtubule cytoskeleton 2.8118E-4 2 106 2 6292
    cytoskeletal part 1.0156E-3 2 201 2 6292
    cytoskeleton 1.1732E-3 2 216 2 6292
    outer plaque of spindle pole body 1.9064E-3 2 6 1 6292
    microtubule organizing center part 5.0798E-3 2 16 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    microtubule nucleation 1.2783E-5 2 23 2 6292
    microtubule cytoskeleton organization 2.3525E-4 2 97 2 6292
    microtubule-based process 3.0847E-4 2 111 2 6292
    cytoskeleton organization 1.3422E-3 2 231 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    structural constituent of cytoskeleton 6.9626E-5 2 53 2 6292
    structural molecule activity 2.8947E-3 2 339 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle