| From Publication: | Ho Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3. |
| Notes: | This molecular complex record represents a population of complexes co-purified by immunoprecipitation of FLAG-tagged Rpc40. The topolgies of protein complexes in this experiment are unknown. |
| Complex Size: | 4 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA polymerase complex | 4.8228E-10 | 4 | 31 | 4 | 6292 |
| nuclear DNA-directed RNA polymerase complex | 4.8228E-10 | 4 | 31 | 4 | 6292 |
| DNA-directed RNA polymerase complex | 4.8228E-10 | 4 | 31 | 4 | 6292 |
| DNA-directed RNA polymerase I complex | 3.5042E-8 | 4 | 14 | 3 | 6292 |
| DNA-directed RNA polymerase III complex | 6.5439E-8 | 4 | 17 | 3 | 6292 |
| nucleolar part | 1.361E-6 | 4 | 45 | 3 | 6292 |
| nuclear lumen | 2.6539E-5 | 4 | 453 | 4 | 6292 |
| organelle lumen | 1.2008E-4 | 4 | 660 | 4 | 6292 |
| intracellular organelle lumen | 1.2008E-4 | 4 | 660 | 4 | 6292 |
| nucleolus | 1.4509E-4 | 4 | 211 | 3 | 6292 |
| membrane-enclosed lumen | 1.5203E-4 | 4 | 700 | 4 | 6292 |
| nucleoplasm part | 2.2664E-4 | 4 | 245 | 3 | 6292 |
| nucleoplasm | 2.8316E-4 | 4 | 264 | 3 | 6292 |
| nuclear part | 9.4015E-4 | 4 | 1103 | 4 | 6292 |
| protein complex | 1.0617E-3 | 4 | 1137 | 4 | 6292 |
| macromolecular complex | 4.5471E-3 | 4 | 1635 | 4 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transcription from RNA polymerase I promoter | 3.901E-7 | 4 | 30 | 3 | 6292 |
| transcription from RNA polymerase III promoter | 8.0979E-7 | 4 | 38 | 3 | 6292 |
| transcription, DNA-dependent | 4.0396E-5 | 4 | 503 | 4 | 6292 |
| RNA biosynthetic process | 4.2031E-5 | 4 | 508 | 4 | 6292 |
| transcription | 5.8652E-5 | 4 | 552 | 4 | 6292 |
| RNA metabolic process | 5.2568E-4 | 4 | 954 | 4 | 6292 |
| cellular macromolecule biosynthetic process | 1.2614E-3 | 4 | 1187 | 4 | 6292 |
| macromolecule biosynthetic process | 1.27E-3 | 4 | 1189 | 4 | 6292 |
| gene expression | 1.7224E-3 | 4 | 1283 | 4 | 6292 |
| nucleic acid metabolic process | 2.5494E-3 | 4 | 1415 | 4 | 6292 |
| nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 3.8261E-3 | 4 | 1566 | 4 | 6292 |
| cellular biosynthetic process | 3.8359E-3 | 4 | 1567 | 4 | 6292 |
| biosynthetic process | 4.1907E-3 | 4 | 1602 | 4 | 6292 |
| cellular nitrogen compound metabolic process | 6.2471E-3 | 4 | 1770 | 4 | 6292 |
| nitrogen compound metabolic process | 6.5492E-3 | 4 | 1791 | 4 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA polymerase activity | 7.1083E-10 | 4 | 34 | 4 | 6292 |
| DNA-directed RNA polymerase activity | 7.1083E-10 | 4 | 34 | 4 | 6292 |
| nucleotidyltransferase activity | 4.9077E-7 | 4 | 168 | 4 | 6292 |
| transferase activity, transferring phosphorus-containing groups | 1.959E-5 | 4 | 420 | 4 | 6292 |
| transferase activity | 2.5575E-4 | 4 | 797 | 4 | 6292 |