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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosolic large ribosomal subunit 1.6066E-11 8 60 6 6292
cytosolic ribosome 4.0213E-10 8 101 6 6292
large ribosomal subunit 6.7792E-10 8 110 6 6292
cytosolic part 1.2751E-9 8 122 6 6292
ribosomal subunit 1.4893E-8 8 183 6 6292
cytosol 2.0832E-7 8 284 6 6292
ribosome 2.3602E-7 8 290 6 6292
ribonucleoprotein complex 7.018E-6 8 514 6 6292
non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
intracellular non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
organelle part 4.4856E-3 8 2282 7 6292
intracellular organelle part 4.4856E-3 8 2282 7 6292
macromolecular complex 5.1894E-3 8 1635 6 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

translation 1.959E-8 8 376 7 6292
ribosomal large subunit assembly 1.4063E-5 8 41 3 6292
cellular protein metabolic process 2.8294E-5 8 1074 7 6292
ribosomal subunit assembly 3.4321E-5 8 55 3 6292
protein metabolic process 4.153E-5 8 1136 7 6292
ribosome assembly 5.4212E-5 8 64 3 6292
cellular macromolecule biosynthetic process 5.6045E-5 8 1187 7 6292
macromolecule biosynthetic process 5.6692E-5 8 1189 7 6292
ribosomal large subunit biogenesis 5.6801E-5 8 65 3 6292
organelle assembly 6.797E-5 8 69 3 6292
gene expression 9.518E-5 8 1283 7 6292
ribonucleoprotein complex assembly 1.6068E-4 8 92 3 6292
cellular biosynthetic process 3.6841E-4 8 1567 7 6292
biosynthetic process 4.2747E-4 8 1602 7 6292
cellular macromolecular complex assembly 1.1976E-3 8 182 3 6292
regulation of translation 2.1802E-3 8 57 2 6292
posttranscriptional regulation of gene expression 2.4935E-3 8 61 2 6292
regulation of cellular protein metabolic process 3.0901E-3 8 68 2 6292
cellular macromolecular complex subunit organization 3.31E-3 8 259 3 6292
regulation of protein metabolic process 3.6499E-3 8 74 2 6292
macromolecular complex assembly 4.1746E-3 8 281 3 6292
cellular macromolecule metabolic process 4.5244E-3 8 2285 7 6292
macromolecule metabolic process 5.4192E-3 8 2349 7 6292
ribosome biogenesis 7.5041E-3 8 346 3 6292
macromolecular complex subunit organization 8.1895E-3 8 357 3 6292
ribonucleoprotein complex biogenesis 9.3216E-3 8 374 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 3.478E-10 8 212 7 6292
structural molecule activity 9.4796E-9 8 339 7 6292
RNA binding 3.1798E-5 8 367 5 6292
rRNA binding 1.6826E-4 8 16 2 6292
nucleic acid binding 5.58E-4 8 666 5 6292
7S RNA binding 1.2715E-3 8 1 1 6292
5S rRNA binding 2.5415E-3 8 2 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle