YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 9 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
PUF4
  • cytoplasm
  • loss of chromatin silencing involved in replicative cell aging
  • protein localization
  • mRNA catabolic process
  • nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
  • mRNA binding
  • RPL3
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • ribosomal large subunit assembly
  • translation
  • structural constituent of ribosome
  • RPL34A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RPL36A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • translation
  • RNA binding
  • structural constituent of ribosome
  • RPL42B, RPL42A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • response to antibiotic
  • response to cycloheximide
  • translation
  • structural constituent of ribosome
  • RPL4A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RPL6A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • ribosomal large subunit assembly
  • translation
  • RNA binding
  • structural constituent of ribosome
  • RPS17B
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • ribosome
  • intracellular
  • telomere maintenance
  • ribosomal small subunit assembly
  • translation
  • structural constituent of ribosome
  • RPS30B, RPS30A
  • stress granule
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic small ribosomal subunit
  • ribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    cytosolic ribosome 2.9593E-14 9 101 8 6292
    cytosolic part 1.4057E-13 9 122 8 6292
    ribosomal subunit 3.8656E-12 9 183 8 6292
    cytosolic large ribosomal subunit 4.7842E-11 9 60 6 6292
    cytosol 1.3549E-10 9 284 8 6292
    ribosome 1.6035E-10 9 290 8 6292
    large ribosomal subunit 2.0049E-9 9 110 6 6292
    ribonucleoprotein complex 1.576E-8 9 514 8 6292
    non-membrane-bounded organelle 2.2129E-6 9 959 8 6292
    intracellular non-membrane-bounded organelle 2.2129E-6 9 959 8 6292
    macromolecular complex 1.4222E-4 9 1635 8 6292
    cytosolic small ribosomal subunit 1.245E-3 9 38 2 6292
    stress granule 1.4304E-3 9 1 1 6292
    organelle part 1.8134E-3 9 2282 8 6292
    intracellular organelle part 1.8134E-3 9 2282 8 6292
    cytoplasmic part 3.4066E-3 9 2482 8 6292
    small ribosomal subunit 4.5346E-3 9 73 2 6292
    cytoplasm 5.7975E-3 9 3552 9 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    translation 1.293E-9 9 376 8 6292
    cellular macromolecule biosynthetic process 2.9528E-7 9 1187 9 6292
    macromolecule biosynthetic process 2.9981E-7 9 1189 9 6292
    gene expression 5.9596E-7 9 1283 9 6292
    cellular biosynthetic process 3.6225E-6 9 1567 9 6292
    biosynthetic process 4.4215E-6 9 1602 9 6292
    cellular protein metabolic process 5.3897E-6 9 1074 8 6292
    protein metabolic process 8.369E-6 9 1136 8 6292
    ribosomal subunit assembly 5.1163E-5 9 55 3 6292
    ribosome assembly 8.0728E-5 9 64 3 6292
    organelle assembly 1.0115E-4 9 69 3 6292
    cellular macromolecule metabolic process 1.0877E-4 9 2285 9 6292
    macromolecule metabolic process 1.3953E-4 9 2349 9 6292
    ribonucleoprotein complex assembly 2.3847E-4 9 92 3 6292
    primary metabolic process 9.2081E-4 9 2896 9 6292
    cellular metabolic process 1.3966E-3 9 3033 9 6292
    response to cycloalkane 1.4304E-3 9 1 1 6292
    response to organic cyclic substance 1.4304E-3 9 1 1 6292
    response to cycloheximide 1.4304E-3 9 1 1 6292
    ribosomal large subunit assembly 1.449E-3 9 41 2 6292
    cellular macromolecular complex assembly 1.7584E-3 9 182 3 6292
    metabolic process 2.004E-3 9 3157 9 6292
    ribosomal large subunit biogenesis 3.6105E-3 9 65 2 6292
    response to antibiotic 4.2857E-3 9 3 1 6292
    cellular macromolecular complex subunit organization 4.8149E-3 9 259 3 6292
    macromolecular complex assembly 6.0565E-3 9 281 3 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    structural constituent of ribosome 1.2758E-11 9 212 8 6292
    structural molecule activity 5.6299E-10 9 339 8 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle