| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.098] [SVM Score: 0.430360187434] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| ARN1 |
|
|
|
| SMF2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| cytoplasmic vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| cytoplasmic membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| vesicle | 3.0291E-4 | 2 | 110 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transition metal ion transport | 4.5626E-5 | 2 | 43 | 2 | 6292 |
| metal ion transport | 8.3521E-5 | 2 | 58 | 2 | 6292 |
| cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
| ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| siderophore-iron transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| iron assimilation by chelation and transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| iron assimilation | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| iron chelate transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| manganese ion transport | 2.224E-3 | 2 | 7 | 1 | 6292 |
| siderophore transport | 2.859E-3 | 2 | 9 | 1 | 6292 |
| iron ion transport | 5.7138E-3 | 2 | 18 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transition metal ion transmembrane transporter activity | 1.9099E-5 | 2 | 28 | 2 | 6292 |
| di-, tri-valent inorganic cation transmembrane transporter activity | 3.0063E-5 | 2 | 35 | 2 | 6292 |
| metal ion transmembrane transporter activity | 5.2295E-5 | 2 | 46 | 2 | 6292 |
| inorganic cation transmembrane transporter activity | 2.5516E-4 | 2 | 101 | 2 | 6292 |
| cation transmembrane transporter activity | 3.4879E-4 | 2 | 118 | 2 | 6292 |
| ion transmembrane transporter activity | 5.3483E-4 | 2 | 146 | 2 | 6292 |
| siderophore-iron transmembrane transporter activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| siderophore transporter activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
| manganese ion transmembrane transporter activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
| substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
| iron ion transmembrane transporter activity | 3.811E-3 | 2 | 12 | 1 | 6292 |
| transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |