| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.085] [SVM Score: 0.436477900726] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| PEX11 |
|
|
|
| POX1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| peroxisomal part | 3.0063E-5 | 2 | 35 | 2 | 6292 |
| microbody part | 3.0063E-5 | 2 | 35 | 2 | 6292 |
| microbody | 8.3521E-5 | 2 | 58 | 2 | 6292 |
| peroxisome | 8.3521E-5 | 2 | 58 | 2 | 6292 |
| microbody lumen | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| peroxisomal matrix | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| peroxisomal membrane | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| microbody membrane | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| lipid oxidation | 2.779E-6 | 2 | 11 | 2 | 6292 |
| fatty acid oxidation | 2.779E-6 | 2 | 11 | 2 | 6292 |
| lipid modification | 1.3945E-5 | 2 | 24 | 2 | 6292 |
| fatty acid metabolic process | 6.1895E-5 | 2 | 50 | 2 | 6292 |
| peroxisome fission | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| monocarboxylic acid metabolic process | 4.5024E-4 | 2 | 134 | 2 | 6292 |
| cellular lipid metabolic process | 8.5067E-4 | 2 | 184 | 2 | 6292 |
| lipid metabolic process | 1.4491E-3 | 2 | 240 | 2 | 6292 |
| organic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| oxoacid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| carboxylic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| fatty acid beta-oxidation | 2.859E-3 | 2 | 9 | 1 | 6292 |
| cellular ketone metabolic process | 3.0157E-3 | 2 | 346 | 2 | 6292 |
| fatty acid catabolic process | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| cellular lipid catabolic process | 5.3968E-3 | 2 | 17 | 1 | 6292 |
| lipid catabolic process | 5.3968E-3 | 2 | 17 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| acyl-CoA oxidase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| oxidoreductase activity, acting on the CH-CH group of donors | 7.6148E-3 | 2 | 24 | 1 | 6292 |