From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.085] [SVM Score: 0.44602347192] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
ATX1 |
|
|
|
CCS1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
cytosol | 2.0305E-3 | 2 | 284 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
copper ion transport | 3.3348E-6 | 2 | 12 | 2 | 6292 |
transition metal ion transport | 4.5626E-5 | 2 | 43 | 2 | 6292 |
metal ion transport | 8.3521E-5 | 2 | 58 | 2 | 6292 |
cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
intracellular copper ion transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
copper chaperone activity | 1.5158E-7 | 2 | 3 | 2 | 6292 |
metallochaperone activity | 3.0316E-7 | 2 | 4 | 2 | 6292 |
copper ion binding | 1.819E-6 | 2 | 9 | 2 | 6292 |
transition metal ion binding | 1.3945E-5 | 2 | 24 | 2 | 6292 |
metal ion binding | 7.5032E-5 | 2 | 55 | 2 | 6292 |
ion binding | 7.7811E-5 | 2 | 56 | 2 | 6292 |
cation binding | 7.7811E-5 | 2 | 56 | 2 | 6292 |
superoxide dismutase copper chaperone activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |