From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.452437700342] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
ADY2 |
|
|
|
MEP2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ammonium transport | 7.579E-7 | 2 | 6 | 2 | 6292 |
organic cation transport | 1.4147E-6 | 2 | 8 | 2 | 6292 |
nitrogen utilization | 6.8716E-6 | 2 | 17 | 2 | 6292 |
cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
acetate transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
organic anion transport | 2.224E-3 | 2 | 7 | 1 | 6292 |
monocarboxylic acid transport | 4.4455E-3 | 2 | 14 | 1 | 6292 |
anion transport | 7.9314E-3 | 2 | 25 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ammonium transmembrane transporter activity | 7.579E-7 | 2 | 6 | 2 | 6292 |
organic cation transmembrane transporter activity | 1.0611E-6 | 2 | 7 | 2 | 6292 |
inorganic cation transmembrane transporter activity | 2.5516E-4 | 2 | 101 | 2 | 6292 |
acetate transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
cation transmembrane transporter activity | 3.4879E-4 | 2 | 118 | 2 | 6292 |
ion transmembrane transporter activity | 5.3483E-4 | 2 | 146 | 2 | 6292 |
organic anion transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
monocarboxylic acid transmembrane transporter activity | 4.4455E-3 | 2 | 14 | 1 | 6292 |
anion transmembrane transporter activity | 6.6645E-3 | 2 | 21 | 1 | 6292 |