From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.471934305192] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
FAA2 |
|
|
|
FAT1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
microbody | 8.3521E-5 | 2 | 58 | 2 | 6292 |
peroxisome | 8.3521E-5 | 2 | 58 | 2 | 6292 |
microsome | 6.3477E-3 | 2 | 20 | 1 | 6292 |
vesicular fraction | 6.3477E-3 | 2 | 20 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
very long-chain fatty acid metabolic process | 1.2712E-3 | 2 | 4 | 1 | 6292 |
lipid metabolic process | 1.4491E-3 | 2 | 240 | 2 | 6292 |
protein myristoylation | 1.5888E-3 | 2 | 5 | 1 | 6292 |
protein amino acid myristoylation | 1.5888E-3 | 2 | 5 | 1 | 6292 |
N-terminal protein lipidation | 1.5888E-3 | 2 | 5 | 1 | 6292 |
N-terminal protein myristoylation | 1.5888E-3 | 2 | 5 | 1 | 6292 |
peptide or protein amino-terminal blocking | 4.7627E-3 | 2 | 15 | 1 | 6292 |
N-terminal protein amino acid modification | 4.7627E-3 | 2 | 15 | 1 | 6292 |
peptidyl-amino acid modification | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
long-chain fatty acid-CoA ligase activity | 7.579E-7 | 2 | 6 | 2 | 6292 |
fatty acid ligase activity | 7.579E-7 | 2 | 6 | 2 | 6292 |
ligase activity, forming carbon-sulfur bonds | 2.2737E-6 | 2 | 10 | 2 | 6292 |
ligase activity | 5.6464E-4 | 2 | 150 | 2 | 6292 |
fatty acid transporter activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
long-chain fatty acid transporter activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
lipid transporter activity | 6.0308E-3 | 2 | 19 | 1 | 6292 |