From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.472973665903] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
NHA1 |
|
|
|
PMA2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
monovalent inorganic cation homeostasis | 3.552E-5 | 2 | 38 | 2 | 6292 |
cation homeostasis | 2.974E-4 | 2 | 109 | 2 | 6292 |
chemical homeostasis | 3.791E-4 | 2 | 123 | 2 | 6292 |
ion homeostasis | 3.791E-4 | 2 | 123 | 2 | 6292 |
potassium ion homeostasis | 1.5888E-3 | 2 | 5 | 1 | 6292 |
cellular potassium ion homeostasis | 1.5888E-3 | 2 | 5 | 1 | 6292 |
homeostatic process | 4.1951E-3 | 2 | 408 | 2 | 6292 |
metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
cellular metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
proton transport | 7.6148E-3 | 2 | 24 | 1 | 6292 |
hydrogen transport | 7.6148E-3 | 2 | 24 | 1 | 6292 |
regulation of biological quality | 7.6561E-3 | 2 | 551 | 2 | 6292 |
regulation of pH | 9.1975E-3 | 2 | 29 | 1 | 6292 |
monovalent inorganic cation transport | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.