From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.099] [SVM Score: 0.473241810896] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
SNF7 |
|
|
|
SNX41 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
endosome | 2.2085E-4 | 2 | 94 | 2 | 6292 |
ESCRT III complex | 1.5888E-3 | 2 | 5 | 1 | 6292 |
endosomal part | 7.2981E-3 | 2 | 23 | 1 | 6292 |
endosome membrane | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
endosome transport | 6.6999E-5 | 2 | 52 | 2 | 6292 |
vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | 5.7138E-3 | 2 | 18 | 1 | 6292 |
retrograde transport, endosome to Golgi | 6.0308E-3 | 2 | 19 | 1 | 6292 |
late endosome to vacuole transport | 7.6148E-3 | 2 | 24 | 1 | 6292 |
intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
phosphatidylinositol-3-phosphate binding | 6.0308E-3 | 2 | 19 | 1 | 6292 |