From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.489524801721] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
internal side of plasma membrane | 5.0527E-7 | 2 | 5 | 2 | 6292 |
extrinsic to internal side of plasma membrane | 5.0527E-7 | 2 | 5 | 2 | 6292 |
TORC1 complex | 7.579E-7 | 2 | 6 | 2 | 6292 |
extrinsic to plasma membrane | 6.8716E-6 | 2 | 17 | 2 | 6292 |
extrinsic to membrane | 6.4422E-5 | 2 | 51 | 2 | 6292 |
plasma membrane part | 8.0641E-5 | 2 | 57 | 2 | 6292 |
extrinsic to vacuolar membrane | 6.3568E-4 | 2 | 2 | 1 | 6292 |
plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
TORC2 complex | 2.859E-3 | 2 | 9 | 1 | 6292 |
extrinsic to organelle membrane | 3.811E-3 | 2 | 12 | 1 | 6292 |
peripheral to membrane of membrane fraction | 4.4455E-3 | 2 | 14 | 1 | 6292 |
endosomal part | 7.2981E-3 | 2 | 23 | 1 | 6292 |
endosome membrane | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein kinase activator activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
kinase activator activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |