From Publication:  Qiu J, Noble WS (2008) Predicting CoComplexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 
Notes:  Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.515553898272] 
Complex Size:  2 proteins 
Protein 
GO Cellular Component  GO Biological Process  GO Molecular Function 
AQR1 



LYP1 



Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
plasma membrane  1.8077E3  2  268  2  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
carboxylic acid transport  8.6451E5  2  59  2  6292 
organic acid transport  8.9432E5  2  60  2  6292 
basic amino acid transport  3.1764E3  2  10  1  6292 
drug transport  4.1283E3  2  13  1  6292 
monocarboxylic acid transport  4.4455E3  2  14  1  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
carboxylic acid transmembrane transporter activity  5.9419E5  2  49  2  6292 
organic acid transmembrane transporter activity  7.2304E5  2  54  2  6292 
substratespecific transmembrane transporter activity  1.7943E3  2  267  2  6292 
basic amino acid transmembrane transporter activity  2.224E3  2  7  1  6292 
transmembrane transporter activity  2.3578E3  2  306  2  6292 
substratespecific transporter activity  2.8436E3  2  336  2  6292 
transporter activity  4.1132E3  2  404  2  6292 
monocarboxylic acid transmembrane transporter activity  4.4455E3  2  14  1  6292 
drug transmembrane transporter activity  4.4455E3  2  14  1  6292 