| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.528570768058] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| APL4 |
|
|
|
| APL5 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| AP-type membrane coat adaptor complex | 4.5979E-6 | 2 | 14 | 2 | 6292 |
| membrane coat | 3.552E-5 | 2 | 38 | 2 | 6292 |
| coated membrane | 3.552E-5 | 2 | 38 | 2 | 6292 |
| AP-3 adaptor complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| clathrin coat of trans-Golgi network vesicle | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| AP-1 adaptor complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| trans-Golgi network transport vesicle membrane | 2.224E-3 | 2 | 7 | 1 | 6292 |
| clathrin adaptor complex | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| trans-Golgi network transport vesicle | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| clathrin vesicle coat | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| clathrin coat | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| clathrin coated vesicle membrane | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| transport vesicle membrane | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| Golgi-associated vesicle membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| clathrin-coated vesicle | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Golgi to vacuole transport | 1.3945E-5 | 2 | 24 | 2 | 6292 |
| post-Golgi vesicle-mediated transport | 1.151E-4 | 2 | 68 | 2 | 6292 |
| vacuolar transport | 3.312E-4 | 2 | 115 | 2 | 6292 |
| Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| clathrin binding | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |