From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.537339414465] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
GET complex | 3.0316E-7 | 2 | 4 | 2 | 6292 |
endoplasmic reticulum part | 5.6464E-4 | 2 | 150 | 2 | 6292 |
subsynaptic reticulum | 5.6464E-4 | 2 | 150 | 2 | 6292 |
endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
retrograde vesicle-mediated transport, Golgi to ER | 1.6421E-5 | 2 | 26 | 2 | 6292 |
Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
cellular calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
response to unfolded protein | 6.3477E-3 | 2 | 20 | 1 | 6292 |
response to biotic stimulus | 6.3477E-3 | 2 | 20 | 1 | 6292 |
response to protein stimulus | 6.3477E-3 | 2 | 20 | 1 | 6292 |
cellular metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |