| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.558570037677] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| BIO5 |
|
|
|
| VHT1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| vitamin transport | 2.2737E-6 | 2 | 10 | 2 | 6292 |
| biotin transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| amide biosynthetic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| biotin biosynthetic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| amide transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| biotin metabolic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| cellular amide metabolic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| monocarboxylic acid transport | 4.4455E-3 | 2 | 14 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| biotin transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| surfactant activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| vitamin transporter activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| cofactor transporter activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |