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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.562728941421]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

TORC2 complex 1.819E-6 2 9 2 6292
internal side of plasma membrane 1.5888E-3 2 5 1 6292
extrinsic to internal side of plasma membrane 1.5888E-3 2 5 1 6292
TORC1 complex 1.9064E-3 2 6 1 6292
peripheral to membrane of membrane fraction 4.4455E-3 2 14 1 6292
extrinsic to plasma membrane 5.3968E-3 2 17 1 6292
endosomal part 7.2981E-3 2 23 1 6292
endosome membrane 7.2981E-3 2 23 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

establishment or maintenance of actin cytoskeleton polarity 1.819E-6 2 9 2 6292
establishment or maintenance of cytoskeleton polarity 1.819E-6 2 9 2 6292
regulation of cell growth 3.3348E-6 2 12 2 6292
regulation of growth 4.5979E-6 2 14 2 6292
cell growth 1.7194E-4 2 83 2 6292
regulation of cell size 3.0847E-4 2 111 2 6292
actin cytoskeleton organization 3.1973E-4 2 113 2 6292
regulation of anatomical structure size 3.2544E-4 2 114 2 6292
regulation of cellular component size 3.2544E-4 2 114 2 6292
actin filament-based process 3.4287E-4 2 117 2 6292
growth 5.275E-4 2 145 2 6292
external encapsulating structure organization 7.5174E-4 2 173 2 6292
cell wall organization 7.5174E-4 2 173 2 6292
cellular cell wall organization 7.5174E-4 2 173 2 6292
cellular cell wall organization or biogenesis 1.0877E-3 2 208 2 6292
cell wall organization or biogenesis 1.0877E-3 2 208 2 6292
cytoskeleton organization 1.3422E-3 2 231 2 6292
mitochondria-nucleus signaling pathway 2.224E-3 2 7 1 6292
fungal-type cell wall organization 3.4937E-3 2 11 1 6292
sphingolipid biosynthetic process 6.0308E-3 2 19 1 6292
membrane lipid biosynthetic process 6.0308E-3 2 19 1 6292
regulation of biological quality 7.6561E-3 2 551 2 6292
membrane lipid metabolic process 9.5139E-3 2 30 1 6292
sphingolipid metabolic process 9.5139E-3 2 30 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein kinase activator activity 2.859E-3 2 9 1 6292
kinase activator activity 3.1764E-3 2 10 1 6292
protein binding 9.4468E-3 2 612 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle