| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.563749192194] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| actin cortical patch | 4.1432E-5 | 2 | 41 | 2 | 6292 |
| cortical actin cytoskeleton | 6.6999E-5 | 2 | 52 | 2 | 6292 |
| cortical cytoskeleton | 6.6999E-5 | 2 | 52 | 2 | 6292 |
| actin cytoskeleton | 1.8038E-4 | 2 | 85 | 2 | 6292 |
| cell cortex part | 2.304E-4 | 2 | 96 | 2 | 6292 |
| cell cortex | 2.974E-4 | 2 | 109 | 2 | 6292 |
| cytoskeletal part | 1.0156E-3 | 2 | 201 | 2 | 6292 |
| cytoskeleton | 1.1732E-3 | 2 | 216 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| endocytosis | 1.9342E-4 | 2 | 88 | 2 | 6292 |
| membrane invagination | 2.2085E-4 | 2 | 94 | 2 | 6292 |
| external encapsulating structure organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
| cell wall organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
| cellular cell wall organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
| cellular membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
| membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
| cellular cell wall organization or biogenesis | 1.0877E-3 | 2 | 208 | 2 | 6292 |
| cell wall organization or biogenesis | 1.0877E-3 | 2 | 208 | 2 | 6292 |
| phosphoinositide dephosphorylation | 2.224E-3 | 2 | 7 | 1 | 6292 |
| phospholipid dephosphorylation | 2.224E-3 | 2 | 7 | 1 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| phosphoinositide-mediated signaling | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| inositol lipid-mediated signaling | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| lipid modification | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| second-messenger-mediated signaling | 9.5139E-3 | 2 | 30 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| inositol-polyphosphate 5-phosphatase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| inositol trisphosphate phosphatase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| phosphoinositide 5-phosphatase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| phosphatidylinositol bisphosphate phosphatase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| inositol or phosphatidylinositol phosphatase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| protein binding, bridging | 6.3477E-3 | 2 | 20 | 1 | 6292 |