From Publication:  Qiu J, Noble WS (2008) Predicting CoComplexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 
Notes:  Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.578630366597] 
Complex Size:  2 proteins 
Protein 
GO Cellular Component  GO Biological Process  GO Molecular Function 
CCS1 



CTR2 



Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
intracellular copper ion transport  5.0527E7  2  5  2  6292 
copper ion transport  3.3348E6  2  12  2  6292 
transition metal ion transport  4.5626E5  2  43  2  6292 
metal ion transport  8.3521E5  2  58  2  6292 
cation transport  2.256E4  2  95  2  6292 
ion transport  3.6076E4  2  120  2  6292 
copper ion transmembrane transport  1.9064E3  2  6  1  6292 
copper ion import  1.9064E3  2  6  1  6292 
intracellular transport  7.7118E3  2  553  2  6292 
establishment of localization in cell  9.0494E3  2  599  2  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
superoxide dismutase copper chaperone activity  3.1786E4  2  1  1  6292 
copper uptake transmembrane transporter activity  9.5344E4  2  3  1  6292 
copper chaperone activity  9.5344E4  2  3  1  6292 
metallochaperone activity  1.2712E3  2  4  1  6292 
copper ion transmembrane transporter activity  1.5888E3  2  5  1  6292 
copper ion binding  2.859E3  2  9  1  6292 
transition metal ion binding  7.6148E3  2  24  1  6292 
transition metal ion transmembrane transporter activity  8.8811E3  2  28  1  6292 