| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.580435931321] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| response to osmotic stress | 1.4784E-4 | 2 | 77 | 2 | 6292 |
| response to abiotic stimulus | 3.4287E-4 | 2 | 117 | 2 | 6292 |
| sodium ion transport | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| potassium ion transport | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| potassium ion homeostasis | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| cellular potassium ion homeostasis | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| response to pH | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| cellular response to glucose starvation | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| hyperosmotic response | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| response to salt stress | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| cellular metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| response to starvation | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| cellular response to starvation | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| monovalent inorganic cation transport | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.