From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.626899870416] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
GLK1 |
|
|
|
XKS1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
monosaccharide catabolic process | 7.2304E-5 | 2 | 54 | 2 | 6292 |
alcohol catabolic process | 8.0641E-5 | 2 | 57 | 2 | 6292 |
cellular carbohydrate catabolic process | 1.2915E-4 | 2 | 72 | 2 | 6292 |
carbohydrate catabolic process | 1.4021E-4 | 2 | 75 | 2 | 6292 |
xylulose catabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
xylulose metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
small molecule catabolic process | 3.9158E-4 | 2 | 125 | 2 | 6292 |
monosaccharide metabolic process | 4.5701E-4 | 2 | 135 | 2 | 6292 |
alcohol metabolic process | 1.2172E-3 | 2 | 220 | 2 | 6292 |
glucose import | 1.2712E-3 | 2 | 4 | 1 | 6292 |
pentose catabolic process | 1.5888E-3 | 2 | 5 | 1 | 6292 |
cellular carbohydrate metabolic process | 1.7276E-3 | 2 | 262 | 2 | 6292 |
mannose metabolic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
glucose transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
carbohydrate metabolic process | 1.9877E-3 | 2 | 281 | 2 | 6292 |
pentose metabolic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
catabolic process | 6.2027E-3 | 2 | 496 | 2 | 6292 |
glycolysis | 7.9314E-3 | 2 | 25 | 1 | 6292 |
hexose transport | 8.248E-3 | 2 | 26 | 1 | 6292 |
monosaccharide transport | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
carbohydrate kinase activity | 3.9411E-6 | 2 | 13 | 2 | 6292 |
xylulokinase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
glucokinase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
hexokinase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
phosphotransferase activity, alcohol group as acceptor | 9.8542E-4 | 2 | 198 | 2 | 6292 |
kinase activity | 1.2395E-3 | 2 | 222 | 2 | 6292 |
transferase activity, transferring phosphorus-containing groups | 4.4459E-3 | 2 | 420 | 2 | 6292 |