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Protein Overview: RPH1

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen NAS2 RPH1 2 Unpublished Fields Lab Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data RPH1 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..59] Pfam 24.920819 jmjN domain No confident structure predictions are available.
2 View Details [60..198] MSA 3.084997 View MSA. No confident structure predictions are available.
3 View Details [199..378] Pfam 57.05061 JmjC domain No confident structure predictions are available.
4 View Details [379..431] deduced N/A Confident ab initio structure predictions are available.
5 View Details [432..587] PSI-BLAST 55.927757 Ying-yang 1 (yy1, zinc finger domain)
6 View Details [588..676] MSA 8.174996 View MSA. No confident structure predictions are available.
7 View Details [677..796] PSI-BLAST 94.9897 Designed zinc finger protein

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2 No functions predicted.
3 No functions predicted.
4
Term Confidence Notes
  • transcription regulator activity
  • 4.70988788192472 bayes_pls_golite062009
  • nucleic acid binding
  • 4.58713908116892 bayes_pls_golite062009
  • DNA binding
  • 4.56219307357342 bayes_pls_golite062009
  • transcription factor activity
  • 3.50954949535763 bayes_pls_golite062009
  • transcription repressor activity
  • 3.27542149084008 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 3.22082323675675 bayes_pls_golite062009
  • binding
  • 3.10743787485868 bayes_pls_golite062009
  • transcription activator activity
  • 2.19952417915035 bayes_pls_golite062009
  • chromatin binding
  • 2.18464662431232 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
  • 1.63161912031789 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 1.42975942698743 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.42446448463712 bayes_pls_golite062009
  • transcription factor binding
  • 1.39608963544799 bayes_pls_golite062009
  • transcription corepressor activity
  • 1.34049786451995 bayes_pls_golite062009
  • double-stranded DNA binding
  • 1.1674904189309 bayes_pls_golite062009
  • protein binding
  • 1.00484935878505 bayes_pls_golite062009
  • transcription cofactor activity
  • 0.77874411480713 bayes_pls_golite062009
  • histone binding
  • 0.687710658383448 bayes_pls_golite062009
  • catalytic activity
  • 0.245893663605433 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle