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Protein Overview: SO1197

General Information:
Name(s) found: SO1197 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • cell division protein FtsH [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 649 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNLILWVV IAVVLMSVFQ GYSPSSSSSQ KMDYSTFLDN VRDGQVATVE VKSDQRTIEG  60
   61 SKRTGEKFTT IMPLYDQDLI NDLDRKGITM KGQEAEESGF LTQIFISWFP MLLLIGVWIF 120
  121 FMRQMQGGGG KGAMSFGKSK AKLMSEDQIK TTFADVAGCD EAKEEVKELV DYLRDPTKFQ 180
  181 KLGGRIPTGV LMVGPPGTGK TLLAKAIAGE SKVPFFTISG SDFVEMFVGV GASRVRDMFE 240
  241 QAKKSAPCII FIDEIDAVGR QRGAGLGGGH DEREQTLNQM LVEMDGFEGN EGIIVIAATN 300
  301 RPDVLDSALL RPGRFDRQVV VGLPDVRGRE QILKVHMRKV PLSEDVKASV IARGTPGFSG 360
  361 ADLANLVNEA ALFAARGNRR VVGMEEFERA KDKIMMGAER RSMVMSEAEK EMTAYHEAGH 420
  421 AIVGCLVPEH DPVHKVTIIP RGRALGVTFF LPEADAISQS RRKLESQISV AYGGRLAEEL 480
  481 IYGTEKVSTG ASQDIKYATS IARNMVTQWG FSDKLGPLLY AEEEGEVFLG RSMGKAKAMS 540
  541 DETATLIDTE VKAFIDKNYS RAKQILQDNV DILHSMKDAL MKYETIDSLQ IDDLMNRREV 600
  601 RQPADWQADE NGSNDKGNGK GEPAVKVDEV VKSAPAEAEL KDADESPVK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] Pfam 26.075721 No description for PF06480.6 was found. No confident structure predictions are available.
    2 View Details [142..649] PSI-BLAST 111.0 EDTA treated

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • hydrolase activity
    		•  2.37825960678081 bayes_pls_golite062009
  • binding
    		•  1.31163400557981 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • GTPase activity
    		•  0.69051700701659 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.489050800152752 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.485303203507997 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.482413717607895 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.457886666766291 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.428373955572763 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.424644011903671 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.424583288440993 bayes_pls_golite062009
  • nucleotide binding
    		•  0.422354428195324 bayes_pls_golite062009
  • peptidase activity
    		•  0.0753480171639475 bayes_pls_golite062009
  • ATP binding
    		•  0.04834397972685 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.0149501427627318 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.00365326483311895 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle