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Protein Overview: CHR19_ARATH

General Information:
Name(s) found: CHR19_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana GN=ETL1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 763 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    DNA binding [IEA][ISS]
    ATP binding [IEA][ISS]
    helicase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN  60
   61 SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV VMRAARVGRR FVIEDEEASD 120
  121 DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD 180
  181 RYSEVETSTV RIVTQNDIDD ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE 240
  241 MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA 300
  301 AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD 360
  361 KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF MLPDIFTTEN VDLKKLLNAE 420
  421 DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ 480
  481 ARLVKLSSKS LNSLAKALPK RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG 540
  541 AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM 600
  601 KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL 660
  661 LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI GQTKPVTIFR LVTKSTVDEN 720
  721 IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..196] deduced N/A No confident structure predictions are available.
    2 View Details [197..763] PSI-BLAST 78.522879 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleoside-triphosphatase activity
    		•  1.69240737024755 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.65296291878002 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.64318297340116 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.64169398852165 bayes_pls_golite062009
  • catalytic activity
    		•  1.37148167194523 bayes_pls_golite062009
  • binding
    		•  1.30574971150356 bayes_pls_golite062009
  • ATPase activity
    		•  1.20060977637766 bayes_pls_golite062009
  • transporter activity
    		•  1.14815595550467 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  1.08141765801535 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.01232806016411 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.92246823619313 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.89546790004613 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.89065853471483 bayes_pls_golite062009
  • hydrolase activity
    		•  0.875592967682638 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.8668136831732 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.86536264587818 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.86511385357843 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.495953203188599 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.3056113353665 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.30512981340046 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.30259037403175 bayes_pls_golite062009
  • nucleotide binding
    		•  0.28998663538132 bayes_pls_golite062009
  • DNA binding
    		•  0.128213991729785 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.125640198783258 bayes_pls_golite062009
  • helicase activity
    		•  0.00674361801283974 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle