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Protein Overview: CSP1_ARATH

General Information:
Name(s) found: CSP1_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 299 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: response to cold [IGI]
    DNA duplex unwinding [IDA]
    RNA secondary structure unwinding [IDA]
    Molecular Function: nucleic acid binding [ISS]
    RNA binding [IDA]
    double-stranded DNA binding [IDA]
    single-stranded DNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEDQSAAR STGKVNWFNA SKGYGFITPD DGSVELFVHQ SSIVSEGYRS LTVGDAVEFA  60
   61 ITQGSDGKTK AVNVTAPGGG SLKKENNSRG NGARRGGGGS GCYNCGELGH ISKDCGIGGG 120
  121 GGGGERRSRG GEGCYNCGDT GHFARDCTSA GNGDQRGATK GGNDGCYTCG DVGHVARDCT 180
  181 QKSVGNGDQR GAVKGGNDGC YTCGDVGHFA RDCTQKVAAG NVRSGGGGSG TCYSCGGVGH 240
  241 IARDCATKRQ PSRGCYQCGG SGHLARDCDQ RGSGGGGNDN ACYKCGKEGH FARECSSVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] PSI-BLAST 18.39794 CRYSTAL STRUCTURE OF CSPA, THE MAJOR COLD SHOCK PROTEIN OF ESCHERICHIA COLI
    2 View Details [77..218] PSI-BLAST 15.045757 HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN
    3 View Details [219..299] PSI-BLAST 8.221849 NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  4.29626483284963 bayes_pls_golite062009
  • DNA binding
    		•  3.71771169141041 bayes_pls_golite062009
  • binding
    		•  2.83465364476231 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  2.18907296204914 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.13063800565247 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.10110937001387 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.9581702424972 bayes_pls_golite062009
  • structural molecule activity
    		•  1.9177190829469 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.81524862921454 bayes_pls_golite062009
  • transcription activator activity
    		•  1.24141936405635 bayes_pls_golite062009
  • protein binding
    		•  1.20309946451799 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.19236946227657 bayes_pls_golite062009
  • transcription factor activity
    		•  1.14242112812892 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.794634028933139 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.794634028933139 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.583085644017496 bayes_pls_golite062009
  • nuclease activity
    		•  0.57381531077345 bayes_pls_golite062009
  • translation regulator activity
    		•  0.31332179848255 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.263197317040851 bayes_pls_golite062009
  • chromatin binding
    		•  0.19409870825073 bayes_pls_golite062009
  • RNA binding
    		•  0.18502033889261 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.125256208482441 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.109774918833391 bayes_pls_golite062009
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  4.15011217435369 bayes_pls_golite062009
  • DNA binding
    		•  3.53875479816163 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.44034453920031 bayes_pls_golite062009
  • transcription factor activity
    		•  2.85277117704074 bayes_pls_golite062009
  • transcription activator activity
    		•  2.7914489292048 bayes_pls_golite062009
  • binding
    		•  2.66299166397108 bayes_pls_golite062009
  • protein binding
    		•  1.9611027722895 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.815065790327049 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.574479324767174 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle