YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: syn-1

General Information:
Name(s) found: syn-1 / CE30968 [WormBase]
Description(s) found:
Found 21 descriptions.
SHOW ALL
  • WBGene00006371 locus:syx-3 Putative syntaxin-3 status:Confirmed UniProt:Q20024 protein_id:CCD62783.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 306 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    plasma membrane [ISSLink to PubMed article]
    Biological Process: cellular membrane fusion [ISSLink to PubMed article]
    intracellular protein transport [IEALink to PubMed article]
    Molecular Function: protein transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRDRLKELQ EKATVNTIHA YNYDPPARKY DVESQPLINQ DADFEMFLER CSNIRGGLKS  60
   61 LEEDYDAVVQ LHGALLSTPG ADSENSNKLK SHNQMFFSKA EQIKNSLKIL SEETSRIPTT 120
  121 ACGIMRAKSD QVKSIYKTFE NIMLNFNREQ DEYKEKAKRK IVDYLKIRNM QLSDEEIENA 180
  181 VSSGNLSEVT KGVMLALNEK KALYDEVKSR ADELKNLERQ MGELAQMFHD LHIMVVSQGE 240
  241 MVDSIVNSVE NATEYAKQAR GNVEEARNLQ KRARKMKVCI IIGSIIAVLI LILFIQSAVC 300
  301 HFTPIC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..306] PSI-BLAST 34.69897 Syntaxin 1A N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phosphatidic acid binding
    		•  8.51970136264329 bayes_pls_golite062009
  • SNAP receptor activity
    		•  3.50393203740159 bayes_pls_golite062009
  • binding
    		•  2.33192450173199 bayes_pls_golite062009
  • calcium-dependent protein binding
    		•  1.88288628726104 bayes_pls_golite062009
  • transporter activity
    		•  1.74189664015129 bayes_pls_golite062009
  • protein binding
    		•  1.61683263008775 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.49085442233849 bayes_pls_golite062009
  • protein transporter activity
    		•  1.29100730674261 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.13101548288086 bayes_pls_golite062009
  • excitatory extracellular ligand-gated ion channel activity
    		•  0.86350507004267 bayes_pls_golite062009
  • extracellular ligand-gated ion channel activity
    		•  0.86350507004267 bayes_pls_golite062009
  • SNARE binding
    		•  0.71459772253941 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.643064875848901 bayes_pls_golite062009
  • gated channel activity
    		•  0.621670335227137 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  0.41937155561589 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  0.41937155561589 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.370484918396857 bayes_pls_golite062009
  • channel activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.0435980899803177 bayes_pls_golite062009
  • phospholipid binding
    		•  0.0172309833091902 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle