| Protein: | syn-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 306 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for syn-1.
| Description | E-value | Query Range |
Subject Range |
|
|
206.0 | [0..51] | [299..131] |
|
Region A: Residues: [1-306] |
1 11 21 31 41 51
| | | | | |
1 MPRDRLKELQ EKATVNTIHA YNYDPPARKY DVESQPLINQ DADFEMFLER CSNIRGGLKS 60
61 LEEDYDAVVQ LHGALLSTPG ADSENSNKLK SHNQMFFSKA EQIKNSLKIL SEETSRIPTT 120
121 ACGIMRAKSD QVKSIYKTFE NIMLNFNREQ DEYKEKAKRK IVDYLKIRNM QLSDEEIENA 180
181 VSSGNLSEVT KGVMLALNEK KALYDEVKSR ADELKNLERQ MGELAQMFHD LHIMVVSQGE 240
241 MVDSIVNSVE NATEYAKQAR GNVEEARNLQ KRARKMKVCI IIGSIIAVLI LILFIQSAVC 300
301 HFTPIC
|
| Detection Method: |  |
| Confidence: | 34.69897 |
| Match: | 1dn1B |
| Description: | Syntaxin 1A N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| phosphatidic acid binding | 8.51970136264329 | bayes_pls_golite062009 |
| SNAP receptor activity | 3.50393203740159 | bayes_pls_golite062009 |
| binding | 2.33192450173199 | bayes_pls_golite062009 |
| calcium-dependent protein binding | 1.88288628726104 | bayes_pls_golite062009 |
| transporter activity | 1.74189664015129 | bayes_pls_golite062009 |
| protein binding | 1.61683263008775 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.49085442233849 | bayes_pls_golite062009 |
| protein transporter activity | 1.29100730674261 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.13101548288086 | bayes_pls_golite062009 |
| excitatory extracellular ligand-gated ion channel activity | 0.86350507004267 | bayes_pls_golite062009 |
| extracellular ligand-gated ion channel activity | 0.86350507004267 | bayes_pls_golite062009 |
| SNARE binding | 0.71459772253941 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.643064875848901 | bayes_pls_golite062009 |
| gated channel activity | 0.621670335227137 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 0.41937155561589 | bayes_pls_golite062009 |
| ligand-gated channel activity | 0.41937155561589 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.370484918396857 | bayes_pls_golite062009 |
| channel activity | 0.0647076360772156 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.0647076360772156 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.0435980899803177 | bayes_pls_golite062009 |
| phospholipid binding | 0.0172309833091902 | bayes_pls_golite062009 |
