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Protein Overview: CE28327

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..142] PSI-BLAST 35.154902 Catalytic domain of E.coli Lon protease
2 View Details [143..232] PSI-BLAST 25.522879 Subunits Rpb4 and Rpb7 of human RNA polymerase II

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • nucleotidyltransferase activity
  • 4.54967057318159 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 3.65740283278356 bayes_pls_golite062009
  • transferase activity
  • 3.04205212257097 bayes_pls_golite062009
  • transcription regulator activity
  • 2.31170537288595 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 2.16830676862423 bayes_pls_golite062009
  • RNA binding
  • 2.05527376734941 bayes_pls_golite062009
  • binding
  • 2.02349222243183 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 1.94887328847363 bayes_pls_golite062009
  • exoribonuclease activity
  • 1.90081280972069 bayes_pls_golite062009
  • nucleic acid binding
  • 1.7414193619112 bayes_pls_golite062009
  • DNA binding
  • 1.58926319237456 bayes_pls_golite062009
  • structural constituent of ribosome
  • 1.38725999901881 bayes_pls_golite062009
  • ribonuclease activity
  • 1.31550811238109 bayes_pls_golite062009
  • mRNA binding
  • 1.17402119891853 bayes_pls_golite062009
  • structural molecule activity
  • 1.04534150109805 bayes_pls_golite062009
  • catalytic activity
  • 0.878454819018611 bayes_pls_golite062009
  • nuclease activity
  • 0.69721312877891 bayes_pls_golite062009
  • 3'-5' exonuclease activity
  • 0.477960254167 bayes_pls_golite062009
  • deacetylase activity
  • 0.390237258762359 bayes_pls_golite062009
  • protein binding
  • 0.214066724623027 bayes_pls_golite062009
    2
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
  • 8.43501887532465 bayes_pls_golite062009
  • RNA polymerase activity
  • 8.43501887532465 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 5.88847066010291 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 3.86808684657182 bayes_pls_golite062009
  • transferase activity
  • 3.42143089321218 bayes_pls_golite062009
  • transcription regulator activity
  • 2.4721848902664 bayes_pls_golite062009
  • binding
  • 2.44438550013082 bayes_pls_golite062009
  • catalytic activity
  • 1.17990683373825 bayes_pls_golite062009
  • histone acetyltransferase activity
  • 0.8583308140751 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
  • 0.8583308140751 bayes_pls_golite062009
  • protein binding
  • 0.520045897607933 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
  • 0.430689791429257 bayes_pls_golite062009
  • ribonuclease activity
  • 0.35631508447468 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
  • 0.288686121121112 bayes_pls_golite062009
  • ribonuclease III activity
  • 0.0092766021353235 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.59

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle