Protein Overview: ttb-1

General Information:
Name(s) found:	ttb-1 / CE27396 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00006648 locus:ttb-1 Transcription initiation factor IIB status:Confirmed UniProt:O16991 protein_id:CCD74279.1 [WormBase] gi\|21362986\|sp\|O16991.2\|TF2B_CAEEL RecName: Full=Transcription initiation factor IIB; AltName: Full=General transcription factor TFIIB [NCBI NR] gi\|17564892\|ref\|NP_503146.1\| TFII(two)B (general transcription factor) family member (ttb-1) [Caenorhabditis elegans] [NCBI NR] gi\|14625302\|gb\|AAG24202.2\| Tfii(two)b (general transcription factor) protein 1 [Caenorhabditis elegans] [NCBI NR] Transcription initiation factor IIB OS=Caenorhabditis elegans GN=ttb-1 PE=3 SV=2 [Swiss-Prot] [wormpep67.fasta] CE27396 WBGene00006648 locus:ttb-1 transcription factor status:Confirmed SW:O16991 protein_id:AAG24202.2 [wormpep150.fasta] 27396 WBGene00006648 locus:ttb-1 transcription factor status:Confirmed SW:O16991 protein_id:AAG24202.2 [wormpep130-phg-ecoli-orf-rand.fasta] TFII(Two)B general transcription factor (33.1 kD) (ttb-1) [Caenorhabditis elegans]gi\|14625302\|gb\|AAG24202.2\| Tfii(two)b (general transcription factor) protein 1 [Caenorhabditis elegans]gi\|21362986\|sp\|O16991\|TF2B_CAEEL Transcription initiation factor IIB [nrdb_11152004_Chlamydomonas] locus:ttb-1 transcription factor status:Confirmed SW:O16991 protein_id:AAG24202.2 [wormpep115.fasta.reversed] CE27396 locus:ttb-1 transcription factor status:Confirmed [wormpep80.hongbin] CE27396 WBGene00006648 locus:ttb-1 transcription factor status:Confirmed UniProt:TF2B_CAEEL protein_id:AAG24202.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE27396 WBGene00006648 locus:ttb-1 transcription factor status:Confirmed UniProt:TF2B_CAEEL protein_id:AAG24202.2\| [wormORF-contam.fasta] TFII(two)B (general transcription factor) family member (ttb-1) [Caenorhabditis elegans] [nr-271106-contam.fasta] Transcription initiation factor IIB (General transcription factor TFIIB) [nr-271106-contam.fasta] Tfii(two)b (general transcription factor) protein 1 [Caenorhabditis elegans] [nr-271106-contam.fasta] CE27396 WBGene00006648 locus:ttb-1 transcription factor status:Confirmed UniProt:O16991 protein_id:AAG24202.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE27396 WBGene00006648 locus:ttb-1 transcription factor status:Confirmed UniProt:O16991 protein_id:CCD74279.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta] CE27396 WBGene00006648 locus:ttb-1 status:Confirmed UniProt:O16991 protein_id:CCD74279.1 Transcription initiation factor IIB [wormpep246-ecoli-contam.fasta]
Organism:	Caenorhabditis elegans
Length:	306 amino acids
Gene Ontology:
Cellular Component:	transcription factor complex [IEA]
Biological Process:	embryonic development ending in birth or egg hatching [IMP] regulation of transcription, DNA-dependent [IEA] transcription initiation [IEA] regulation of transcription [IEA]
Molecular Function:	zinc ion binding [IEA] transcription regulator activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPVQCPIH PDVHLIEDHR AGDLVCPACG LVVGDRLVDV GTEWRSFSNE RSGNDPSRVG  60
   61 APENPLLSGG DLSTTIAVGF GGSDSDNSLA NAQRKSMNNT DRQMTAAMSL IREMSERIHL 120
  121 PRNIQDSASR IFKDVLESKA LRGKNNEAQA AACLYIACRK DGVPRTFKEI CAVSRVSKKE 180
  181 IGRCFKIIVR SLETNLEQIT SADFMSRFCG NLSLPNSIQA AATRIAKCAV DMDLVAGRTP 240
  241 ISIAAAAIYM ASQASAEKRS AKEIGDVAGA AEITVRQTYK LLYPKALELF PKDFRFVTPI 300
  301 DALPNS

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
general RNA polymerase II transcription factor activity	5.56373197054355	bayes_pls_golite062009
transcription elongation regulator activity	4.94644536450092	bayes_pls_golite062009
DNA-directed RNA polymerase activity	4.00205139503916	bayes_pls_golite062009
RNA polymerase activity	4.00205139503916	bayes_pls_golite062009
transcription regulator activity	3.26689775782701	bayes_pls_golite062009
nucleic acid binding	2.22680674586367	bayes_pls_golite062009
binding	2.0546846758949	bayes_pls_golite062009
DNA binding	2.01468878668039	bayes_pls_golite062009
positive transcription elongation factor activity	1.49227692053981	bayes_pls_golite062009
RNA polymerase II transcription factor activity	1.48570514124545	bayes_pls_golite062009
nucleotidyltransferase activity	1.10975425818967	bayes_pls_golite062009
protein binding	0.549662583711205	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.536637459961958	bayes_pls_golite062009
DNA primase activity	0.494157804587957	bayes_pls_golite062009
catalytic activity	0.433059249914853	bayes_pls_golite062009
RNA polymerase II transcription elongation factor activity	0.0384907163875292	bayes_pls_golite062009

Term	Confidence	Notes
general RNA polymerase II transcription factor activity	6.34389570239956	bayes_pls_golite062009
cyclin-dependent protein kinase regulator activity	3.19553060844126	bayes_pls_golite062009
protein kinase regulator activity	2.87088741581791	bayes_pls_golite062009
transcription regulator activity	2.795846725429	bayes_pls_golite062009
binding	2.4204867358489	bayes_pls_golite062009
nucleic acid binding	2.04886889839181	bayes_pls_golite062009
RNA polymerase II transcription factor activity	2.00665312545368	bayes_pls_golite062009
DNA binding	1.94297811210385	bayes_pls_golite062009
transcription elongation regulator activity	1.69439693414478	bayes_pls_golite062009
kinase regulator activity	1.65109787211976	bayes_pls_golite062009
protein binding	1.47106731485576	bayes_pls_golite062009
transcription factor activity	1.21921365719206	bayes_pls_golite062009
transcription factor binding	0.749278791251235	bayes_pls_golite062009
enzyme regulator activity	0.729629809946521	bayes_pls_golite062009
positive transcription elongation factor activity	0.42590121577004	bayes_pls_golite062009
transcription coactivator activity	0.138191616709499	bayes_pls_golite062009
transcription activator activity	0.0696060248241566	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..70]	FFAS03	3.1	RDC-derived models of the zinc ribbon domain of human general transcription TFIIB (zinc bound structures)
2	View Details	[71..306]	PSI-BLAST	39.69897	Transcription factor IIB (TFIIB), core domain

Protein Overview: ttb-1

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: