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Protein Overview: ssr2

General Information:
Name(s) found: ssr2 / SPAC23H3.10 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • SWI/SNF and RSC complex subunit Ssr2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 503 amino acids

    Gene Ontology:
    Cellular Component: SWI/SNF complex [IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    RSC complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [NASLink to PubMed article]
    regulation of gene-specific transcription from RNA polymerase II promoter [ICLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDQVRIPF LVEQTYPIIV PSYAGWFDMS KIHDIERRSN PEFFNGKSPL KTPSIYKDYR  60
   61 DFMINSYRLE PNEYLTVTAC RRNLVGDVCA IIRVHAFLEQ WGLINYQIDP ETRPAFRLPP 120
  121 ISGHVQAISN TPIVTQEMLA QHPPPSTVGG SSSQEFVKLE EKHYSPSLNA MEQTSPKEED 180
  181 EKSDKVPRVD KVCFTCGVNC SQTWYHNLKN KKYDICPNCY KQGRFSSSFN SSDFLCMDAI 240
  241 DFNHDEEKPW SNQETLLLLE AIETYGDDWN QIALHVGSRT KEQCLIHFLQ IPIEDPYRQK 300
  301 LQGDFSPFKK GFLPFDENEN PVLSTLTYLA SIVQQGMKER KQNESVKQGE TSFGNSEFKN 360
  361 PLERVAYYAL KSAAQKAKLI AAFENRQLRR LVFSLIQAQL EKLQLKMKVL EQLEKMCSLE 420
  421 LSELDLRGKN LLLSRLSTKK MLLAFNKKLE EAVNLGGEDG LKIIDDLMST EHAEALLTFE 480
  481 MPTATTVSPL SKQYPDKFRT IAL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] PSI-BLAST 35.0 Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes
    2 View Details [159..244] FFAS03 2.54 No description for 2dipA was found.
    3 View Details [245..375] PSI-BLAST 17.39794 CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES
    4 View Details [376..503] PSI-BLAST 3.09691 Structure of the full-length E. coli ParC subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.70912934275371 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.69310847474187 bayes_pls_golite062009
  • protein binding
    		•  2.53639372327734 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.31493818053907 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  2.01832887083768 bayes_pls_golite062009
  • DNA binding
    		•  2.0126776192216 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.91556680192956 bayes_pls_golite062009
  • transcription activator activity
    		•  1.44069932994662 bayes_pls_golite062009
  • transcription factor activity
    		•  1.23220438818624 bayes_pls_golite062009
  • transcription factor binding
    		•  0.987482369490121 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.92569568619287 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.876703944945945 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.842690858803658 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.740437317894105 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.308921486763847 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.190105232754922 bayes_pls_golite062009
  • catalytic activity
    		•  0.168711389690753 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.137379573046724 bayes_pls_golite062009
  • ligase activity
    		•  0.130845594476754 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.121420290407334 bayes_pls_golite062009
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  5.13863038737912 bayes_pls_golite062009
  • DNA binding
    		•  4.66369707598026 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.51452285155271 bayes_pls_golite062009
  • transcription factor activity
    		•  4.06706589695599 bayes_pls_golite062009
  • transcription repressor activity
    		•  3.55154985983449 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  3.5139760613123 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.16896789933192 bayes_pls_golite062009
  • transcription activator activity
    		•  3.10621734076555 bayes_pls_golite062009
  • binding
    		•  3.02779747447702 bayes_pls_golite062009
  • protein binding
    		•  1.88087411289001 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.73068440195944 bayes_pls_golite062009
  • chromatin binding
    		•  1.68956710349366 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.62096064323298 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.49423102874486 bayes_pls_golite062009
  • transcription factor binding
    		•  1.40653841901929 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  1.40149699217445 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  1.40149699217445 bayes_pls_golite062009
  • protein deacetylase activity
    		•  1.23680480131205 bayes_pls_golite062009
  • histone deacetylase activity
    		•  1.18932416576802 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.84983974758882 bayes_pls_golite062009
  • histone binding
    		•  0.557787598121402 bayes_pls_golite062009
  • deacetylase activity
    		•  0.530687254192222 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.284650049512347 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.2679415219517 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.236060274498333 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  0.212884313176726 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle