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Protein Overview: SPCC550.15c

General Information:
Name(s) found: SPCC550.15c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • ribosome biogenesis protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 463 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    cytosolic large ribosomal subunit [ISSLink to PubMed article]
    Biological Process: nucleocytoplasmic transport [ISS]
    ribosomal large subunit biogenesis [ISSLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSFACTTC TVAFNNAESQ KIHWKSDWHH YNLKRKVASL PPLSAEVFAG KILSIQKQNE  60
   61 EVQKKAEFYQ NCEVCNKKFY SEGAYSSHMA SKKHRDNLSK FQRNSRIKKL QSEDASSIAS 120
  121 STLSMGEPVV DSEIEEEEDL ASQLTSRAIS LSNLSLHGRE SEPSKTELAT SIPQSNEASK 180
  181 SHLFTQEPTP EEIEAELARR SSQRLSPRDC LFCAASFSSF DTCKKHMKAS HSLYIPEREY 240
  241 LVDEPSLFDY LAEKISIGFT CLTCNREFKS LEAVRAHMQQ KGHTSIAYDT EDEQLELSDF 300
  301 YDFTTSYPDY AVKQDETVVE EDGSSGEGDW EDVSDDSDNS SLDSLEMGRV PIADEYELHL 360
  361 PSGNRVGHRS LSRYFRQNLH SSSTAVGDGA SIHQNVARRA MSGNARAYRQ AVETSIAGVR 420
  421 DGRKNYSASH IKSFQDQRRR EEFANKMGIK NNTKKHFRDA LLQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] FFAS03 4.4 Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa
    2 View Details [143..362] PSI-BLAST 38.221849 No description for 2i13A was found.
    3 View Details [363..463] MSA 3.302995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.11787660816151 bayes_pls_golite062009
  • RNA binding
    		•  1.69160965456631 bayes_pls_golite062009
  • protein binding
    		•  1.35089021956018 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.11154857147446 bayes_pls_golite062009
  • DNA binding
    		•  0.941461311504448 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.725938680780418 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.354810987215404 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle