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Protein Overview: rlp1

General Information:
Name(s) found: rlp1 / SPBC1685.11 [Sanger Pombe]
Description(s) found:
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  • pir||T39527 hypothetical protein SPBC1685.11 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74626846|sp|O74331.1|RLP1_SCHPO RecName: Full=DNA repair protein rlp1; AltName: Full=RecA-like protein 1 [NCBI NR]
  • gi|3367794|emb|CAA20059.1| RecA family ATPase Rlp1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112007|ref|NP_595215.1| RecA family ATPase Rlp1 [Schizosaccharomyces pombe] [NCBI NR]
  • RecA family ATPase Rlp1 [Sanger Pombe]
  • DNA repair protein rlp1 OS=Schizosaccharomyces pombe GN=rlp1 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE DNA REPAIR PROTEIN: O74331; [pompepVF.fasta]
  • Hypothetical protein [pompep4896]
  • |||putative DNA repair protein [pompepnew.fasta]
  • Involved in DNA repair (Predicted); shares conserved SGKTE[LM]LYHL (Possibly ATP/GTP binding motif) with human and mouse XRCC2 protein; non-essential (PMID 12618370); no apparent S. cerevisiae ortholog [4896.FASTAC]
  • |||involved in DNA repair (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|3367794|emb|CAA20059.1| involved in DNA repair (predicted); shares conserved SGKTE[LM]LYHL (possibly ATP/GTP binding motif) with human and mouse XRCC2 protein; non-essential (PMID 12618370); no apparent [nrdb_11152004_Chlamydomonas]
  • |rlp1||RecA family |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O74331) Hypothetical protein [pompep4896_normal_reversed]
  • |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • DNA-repair protein rlp1 (RecA-like protein 1) [nr-271106-contam.fasta]
  • SPBC1685.11 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC1685.11 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • DNA repair protein rlp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rlp1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 363 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: reciprocal meiotic recombination [IMPLink to PubMed article]
    recombinational repair [IMPLink to PubMed articleLink to PubMed article]
    replication fork processing [IMPLink to PubMed article]
    Molecular Function: ATPase activity [RCALink to PubMed article]
    protein binding [IPILink to PubMed articleLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAAEWVAEL KRKSQIESFK EQKGLVYDDH IEKVLYSGSV NGTLLVIEGN SCSGKTELLY  60
   61 HLASNVLLRS SQELVLIVSS EWDWSIKRLT FILHERLISS RGVSQTCKCN CAVKLENEST 120
  121 VHLQNAARED GTDEDINSNS VNDVSLSSGE TMLQFPEHEE QHECNREMEQ LYESASSTVY 180
  181 PCSFWEDAER KIDAQCAILW PMEFSGVVES IPQSTKDLLR IWKEAKIQMH EDFRCNKTEF 240
  241 NEACFDASSS RLGCILMDGL STFYWQLRLE RGYTQVYADL QNRLCTSSKL FGCPVVCTNW 300
  301 LLNNKQHLPI QCKRFRSERR ANARFYLENC VSKLGETFYL SVKGVQTKTE MASPYSQQEM 360
  361 EKV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..363] FFAS03 3.33 Crystal Structure of E. Coli RecA in a Compressed Helical Filament Form 2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.98872728862535 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.46809935501802 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.22434861137232 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.00145424382707 bayes_pls_golite062009
  • DNA binding
    		•  0.959585045949425 bayes_pls_golite062009
  • catalytic activity
    		•  0.942640875796745 bayes_pls_golite062009
  • helicase activity
    		•  0.930824665371921 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.779711797772654 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.635755758124593 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.525155854231881 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.462905141047669 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.364091846246035 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.364091846246035 bayes_pls_golite062009
  • microtubule motor activity
    		•  0.164834930785497 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  0.154898276937478 bayes_pls_golite062009
  • DNA clamp loader activity
    		•  0.0762708672638941 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0142902906813618 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle