YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: adl1

General Information:
Name(s) found: adl1 / SPBC713.06 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
SHOW ALL
  • DNA ligase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 774 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][NASLink to PubMed article]
    Biological Process: DNA repair [IEA]
    signal transduction [IEA]
    DNA replication [IEA]
    DNA recombination [IEA]
    Molecular Function: DNA binding [IEA]
    ATP binding [IEA]
    DNA ligase (ATP) activity [IEA]
    signal transducer activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKKRMKNG SSLKSTSKKG EKSRNIITIQ DLFSKREAQL TDTPNKLLTD HDQSASDYAY  60
   61 ALKLQQLFDS ENQATAPEKL PKDVIIPEEE YHTDTFNVVK ESNDKPKENL VTSEECKASF 120
  121 FSTDSVNKDS TIDYDALQKD PLTYVKSCRA RFVSKDTKSF SYSSLANTFS LISSTKSRIR 180
  181 IVTLLTNFLL TLLYADPDSL IATVWLCTNS IAPNFYGKNL GVGPAMYSKA LKEVCGITAS 240
  241 ALKNLWNKYG DPGDVAFEAK VSVRTLSRPE PLTIKKVYST LLKIADSNGN GAQNRKLELT 300
  301 KFLLISSNAE EVRYIGRSIM QNLRIGAVQN TMLASLSKAF FIFDNQNEIF NFNSDSLQQQ 360
  361 FRQGEEIVKQ SFFQVPDYNI LVATLLREGI ENLKDNMSIR PGIPVKPMLG SITKNLQHML 420
  421 ERLTDHNFSC EFKYDGQRAQ IHCDRLGNIK IFSRHLEEIT GRFPDVIEVA QLALKHSCDF 480
  481 IIEGELVAID KSNGQILDFQ KLSTRERKKV TVADITIDVC VFVFDIMFCD GKSCLQMPLI 540
  541 ERRRMFFEHF NLIPNRFQFV SSLETNEEQS IQEFFSLAIT NKCEGLMVKV LNGTNSKFPS 600
  601 TYEPDKRGEG WIKVKQDYDD EFESLDLVPI GAWYGNGRKA GWFSPILLAV YNPDTGAYEA 660
  661 VCKCMSGFSD QFYKELTQKY SLESGNSSLK PIYNFCETGK VTPQIYFAPQ EVWEIKGAQI 720
  721 TSSPAYKAAL GLIQDDRGLS IRFPRFIRVR SDKGPEDAST NSILADMYMK QLNT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] deduced N/A No confident structure predictions are available.
    2 View Details [113..774] PSI-BLAST 1000.0 Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • DNA ligase activity
    		•  5.12640522664474 bayes_pls_golite062009
  • ligase activity, forming phosphoric ester bonds
    		•  5.0464977640909 bayes_pls_golite062009
  • DNA ligase (ATP) activity
    		•  3.18914513915107 bayes_pls_golite062009
  • DNA ligase (NAD+) activity
    		•  3.1488483282989 bayes_pls_golite062009
  • ligase activity
    		•  2.17096583980208 bayes_pls_golite062009
  • catalytic activity
    		•  2.15370807854636 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.4725380374617 bayes_pls_golite062009
  • binding
    		•  1.23714137231717 bayes_pls_golite062009
  • DNA binding
    		•  1.1855473374207 bayes_pls_golite062009
  • protein binding
    		•  0.0772495917382868 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle