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Protein Overview: gi|108811848, gi...

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..590] PSI-BLAST 1000.0 AMINO TERMINAL 67KDA DOMAIN OF ESCHERICHIA COLI DNA TOPOISOMERASE I (RESIDUES 2-590 OF MATURE PROTEIN) CLONING ARTIFACT ADDS TWO RESIDUES TO THE AMINO-TERMINUS WHICH WERE NOT OBSERVED IN THE EXPERIMENTAL ELECTRON DENSITY (GLY-2, SER-1).
2 View Details [591..753] FFAS03 1.24 No description for 2gaiA was found.
3 View Details [754..871] PSI-BLAST 28.69897 C-TERMINAL DOMAIN OF ESCHERICHIA COLI TOPOISOMERASE I

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • DNA topoisomerase activity
  • 10.2798831210729 bayes_pls_golite062009
  • DNA topoisomerase type I activity
  • 8.04585827786358 bayes_pls_golite062009
  • isomerase activity
  • 5.61256457337998 bayes_pls_golite062009
  • DNA binding
  • 5.20730175008144 bayes_pls_golite062009
  • nucleic acid binding
  • 4.95671919332271 bayes_pls_golite062009
  • binding
  • 4.3089127577748 bayes_pls_golite062009
  • catalytic activity
  • 1.50449367975676 bayes_pls_golite062009
  • protein binding
  • 0.377429709958808 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • DNA primase activity
  • 5.9540205863426 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 3.28799371541043 bayes_pls_golite062009
  • transcription regulator activity
  • 3.10492296137226 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 2.95899525707851 bayes_pls_golite062009
  • RNA polymerase activity
  • 2.95899525707851 bayes_pls_golite062009
  • binding
  • 2.05994835507055 bayes_pls_golite062009
  • nucleic acid binding
  • 1.92096402764448 bayes_pls_golite062009
  • DNA binding
  • 1.82925061950188 bayes_pls_golite062009
  • protein binding
  • 0.557273506579609 bayes_pls_golite062009
  • transcription elongation regulator activity
  • 0.47808023373242 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 0.453051411850154 bayes_pls_golite062009
  • catalytic activity
  • 0.434839928397784 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 0.240481799431949 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle