Protein Overview: gi|6730174, gi|6...

General Information:
Name(s) found:	gi\|6730177 [NCBI NR] gi\|6730174 [NCBI NR] gi\|6573465 [NCBI NR] gi\|6573463 [NCBI NR] gi\|6435679 [NCBI NR] gi\|6435678 [NCBI NR] gi\|6435677 [NCBI NR]
Description(s) found: Found 13 descriptions. SHOW ALL	gi\|6730177\|pdb\|1CK8\|B Chain B, Rpl30-Mrna Complex From Yeast [NCBI NR] gi\|6730174\|pdb\|1CK5\|B Chain B, Ribosomal Protein L30-Mrna Complex From Yeast [NCBI NR] gi\|6573465\|pdb\|1CN9\|A Chain A, Rpl30-Mrna Complex [NCBI NR] gi\|6573463\|pdb\|1CN8\|A Chain A, Ribosomal Protein L30-Mrna Complex From Yeast [NCBI NR] gi\|6435679\|pdb\|1CN7\|A Chain A, Yeast Ribosomal Protein L30 [NCBI NR] gi\|6435678\|pdb\|1CK9\|A Chain A, Solution Structure Of Yeast Ribosomal Protein L30 [NCBI NR] gi\|6435677\|pdb\|1CK2\|A Chain A, Yeast (Saccharomyces Cerevisiae) Ribosomal Protein L30 [NCBI NR]
Organism:	Saccharomyces cerevisiae
Length:	104 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 APVKSQESIN QKLALVIKSG KYTLGYKSTV KSLRQGKSKL IIIAANTPVL RKSELEYYAM 60 61 LSKTKVYYFQ GGNNELGTAV GKLFRVGVVS ILEAGDSDIL TTLA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	ZDS1	Sample 2- cpn2 from june 2005	McCusker D, et al (2007)
View Run	ZDS1	Sample 3 - cpn + atp, from june 2005	McCusker D, et al (2007)
View Run	BOI1	Sample boi 1 with ha tag from october 2005	McCusker D, et al (2007)
View Run	BOI1	Sample boi1 with gst from october 2005	McCusker D, et al (2007)
View Run	BOI1	Sample bob1 (2nd set) from october 2005	McCusker D, et al (2007)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..104]	PSI-BLAST	23.221849	Joint X-ray and NMR Refinement of Yeast L30e-mRNA complex

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
structural constituent of ribosome	7.52323416912124	bayes_pls_golite062009
structural molecule activity	6.97581143389173	bayes_pls_golite062009
RNA binding	5.39762744650785	bayes_pls_golite062009
pre-mRNA 5'-splice site binding	5.13266824583271	bayes_pls_golite062009
	3.80269215693277	bayes_pls_golite062009
nucleic acid binding	2.83245292332884	bayes_pls_golite062009
mRNA binding	2.62944559104613	bayes_pls_golite062009
snoRNA binding	2.44542325037279	bayes_pls_golite062009
binding	1.91254208399282	bayes_pls_golite062009
protein binding	0.381324299701367	bayes_pls_golite062009
catalytic activity	0.264002643439785	bayes_pls_golite062009

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle