YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RIB2

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

  PROTEIN(S) PUBLICATION
View Data RIB2 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..100] PSI-BLAST 3.221849 Ribosomal protein S4
2 View Details [101..166] PSI-BLAST 39.154902 Ribosomal small subunit pseudouridine 516 synthase RsuA; Pseudouridine synthase RsuA N-terminal domain
3 View Details [167..368] PSI-BLAST 39.154902 Ribosomal small subunit pseudouridine 516 synthase RsuA; Pseudouridine synthase RsuA N-terminal domain
4 View Details [369..426] deduced N/A No confident structure predictions are available.
5 View Details [427..591] ORFEUS 11.14 mono-domain cytidine deaminase

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • pseudouridine synthase activity
  • 5.19957135839682 bayes_pls_golite062009
  • intramolecular transferase activity
  • 3.78688422405974 bayes_pls_golite062009
  • isomerase activity
  • 2.91720316078381 bayes_pls_golite062009
  • catalytic activity
  • 2.02180970970004 bayes_pls_golite062009
  • transcription regulator activity
  • 1.21173188039059 bayes_pls_golite062009
  • DNA binding
  • 0.950713703876672 bayes_pls_golite062009
  • nucleic acid binding
  • 0.909704702595901 bayes_pls_golite062009
  • binding
  • 0.730744558777463 bayes_pls_golite062009
  • RNA binding
  • 0.706879359688019 bayes_pls_golite062009
  • transferase activity
  • 0.237728328252954 bayes_pls_golite062009
    3
    Term Confidence Notes
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
  • 3.83901378721842 bayes_pls_golite062009
  • deaminase activity
  • 2.68802865527462 bayes_pls_golite062009
  • catalytic activity
  • 1.70756445127105 bayes_pls_golite062009
  • cyclohydrolase activity
  • 1.34791174229508 bayes_pls_golite062009
  • methyltransferase activity
  • 1.24697538679504 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
  • 1.16679252289538 bayes_pls_golite062009
  • binding
  • 1.05190374148481 bayes_pls_golite062009
  • transferase activity
  • 0.771056210634777 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle