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Protein Overview: PDR16

General Information:
Name(s) found: PDR16 / YNL231C [SGD]
Description(s) found:
Found 27 descriptions.
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  • Phosphatidylinositol transfer protein (PITP) controlled by the multiple drug resistance regulator Pdr1p, localizes to lipid particles and microsomes, controls levels of various lipids, may regulate lipid synthesis, homologous to Pdr17p [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 351 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    microsome [IDALink to PubMed article]
    Biological Process: response to drug [IGILink to PubMed article]
    phospholipid transport [IDALink to PubMed article]
    sterol biosynthetic process [IMPLink to PubMed article]
    Molecular Function: phosphatidylinositol transporter activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKRFSKKKE APEDPKNLIN IDKPIKELPA SIAIPKEKPL TGEQQKMYDE VLKHFSNPDL  60
   61 KVYTSEKNKS EDDLKPLEEE EKAWLTRECF LRYLRATKWV LKDCIDRITM TLAWRREFGI 120
  121 SHLGEEHGDK ITADLVAVEN ESGKQVILGY ENDARPILYL KPGRQNTKTS HRQVQHLVFM 180
  181 LERVIDFMPA GQDSLALLID FKDYPDVPKV PGNSKIPPIG VGKEVLHILQ THYPERLGKA 240
  241 LLTNIPWLAW TFLKLIHPFI DPLTREKLVF DEPFVKYVPK NELDSLYGGD LKFKYNHDVY 300
  301 WPALVETARE KRDHYFKRFQ SFGGIVGLSE VDLRGTHEKL LYPVKSESST V

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Qiu et al. (2008) CDC50 FAT1 PDR16 SFH5

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data PDR16 and ERG6 Huh WK, et al. (2003)
    View Data PDR16 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..57]
    [113..351]    		 PSI-BLAST 139.68867 N-terminal domain of phosphatidylinositol transfer protein sec14p; C-terminal domain of phosphatidylinositol transfer protein sec14p
    2 View Details [58..112] PSI-BLAST 139.68867 N-terminal domain of phosphatidylinositol transfer protein sec14p; C-terminal domain of phosphatidylinositol transfer protein sec14p

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phospholipid transporter activity
    		•  4.82372291869245 bayes_pls_golite062009
  • lipid transporter activity
    		•  3.44932625048477 bayes_pls_golite062009
  • phosphatidylinositol transporter activity
    		•  3.08477039249457 bayes_pls_golite062009
  • binding
    		•  1.41701101210975 bayes_pls_golite062009
  • transporter activity
    		•  1.00447017621654 bayes_pls_golite062009
  • vitamin binding
    		•  0.87942237566918 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.658164745879483 bayes_pls_golite062009
  • vitamin E binding
    		•  0.425230876259729 bayes_pls_golite062009
  • protein binding
    		•  0.132818074687599 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle