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Protein Overview: YMR185W

General Information:
Name(s) found: YMR185W [SGD]
Description(s) found:
Found 23 descriptions.
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  • Putative protein of unknown function; conflicting evidence on whether null mutant is viable with elongated buds, or inviable [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 981 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEDKEQKIN IHDILNTRPK LTKKTALDVF FEDLDDNVIT PINEYVLDSG SSSSSSIYQA  60
   61 LKCSNNNEFV AVLLQKFQNL HIHVLEQQRR LIESKSDLLP ISLHDMKYVD ELINLLIIHG 120
  121 IDANLSPTMK IPFDSKRINT FKKGQKSAEY ETPRWHTINN DTLSQVITVF YNVLTSERSS 180
  181 DYLREIISKG SAYANILLGL IVLHLQLPNR YSSQMITNLE DTQETYTLFG VYTLLVETIQ 240
  241 DEKVREPILS KLTTLTLRRP ENGLISLIDF VLGVRDAEDI DIEKFNRIYQ ILMSKPKTMT 300
  301 NLQYLTELFK QIYDGLTFVN RPILVTCLNG LILKFYLRNK RIVNDFLFKK VRSIIFNSPL 360
  361 TDHTAKELND VINVLISLSK NSSSDLLNDL VTSCPDEDGT TPGQFFLYVW IYALFLKKNQ 420
  421 KLDPLEINKL SISDNKSTDS IHFPEQSSSK YYEVVLSLLK SLIVITENFQ YLNVLSLNLL 480
  481 NFEHEKWKYL IDLDTQLPYI SVKNTDMAEL FFEKGSKNSQ ISEFLQDMDL SIELFMEFLV 540
  541 LLNDEEQSKT LFLDILKRWV HHTKKSEKRS SDNHSGMPSV TDNALILMDL KLLECMNNRF 600
  601 KTKIVNKPKD VLIVIDQLID VVQEKDETIQ EVEADSDDEV EEGEETEELD PNENSSYKII 660
  661 LQLLSTVLSE SSSSILLQNS YILKSISRKL QSFNTNASEI DALLASIDNI LINGHTTERN 720
  721 DNIEIEMDEE RLDKAITSLH DPLVPIKSYG LTELRHLAEK KSPVISLEKV LQIHLDYLKN 780
  781 MDPFIYLNVI KGLTTLCELE PETILPLLAE FYANKKKKNR LDDVLKVGEV FINYIQRQNE 840
  841 LFQGKLAYLI IDTCLSIVRP NDSKPLDNRW RMSSMSILGM CLQINARGVS DRIRDMLDCV 900
  901 FGILQLEQPQ NHLKDKDDSF LMRRSAVHLI HDLLYSTGFD LLPFEYNYDK LKTLLSYVRD 960
  961 QDEDYMVCEQ IDKLLTVLDS L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run YMR185W No Comments Hazbun TR, et al. (2003)
    View Run NSE3 No Comments Hazbun TR, et al. (2003)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YMR185W and SPC42 Unpublished Data
    View Data YMR185W Unpublished Data

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] deduced N/A No confident structure predictions are available.
    2 View Details [153..368] ORFEUS 13.5 Importin beta
    3 View Details [369..563] ORFEUS 13.5 Importin beta
    4 View Details [564..659] ORFEUS 13.5 Importin beta
    5 View Details [660..777] ORFEUS 13.5 Importin beta
    6 View Details [778..981] ORFEUS 13.5 Importin beta

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.4666436207573 bayes_pls_golite062009
  • protein binding
    		•  1.12452075263773 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.410251595672781 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle