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Protein Overview: YIM1

General Information:
Name(s) found: YIM1 / YMR152W [SGD]
Description(s) found:
Found 26 descriptions.
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  • Protein of unknown function; null mutant displays sensitivity to DNA damaging agents; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 365 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    mitochondrion [IDALink to PubMed articleLink to PubMed article]
    Biological Process: response to DNA damage stimulus [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEIVTNKS VTYVNNTTPV TITSSELDLR SCYQDDEVVI EVHAAALNPI DFITHQLCNS  60
   61 YIFGKYPKTY SRDYSGVIIK AGKDVDNRWK VGDKVNGMYS HIYGERGTLT HYLILNPAKD 120
  121 VPITHMVEVP KDENDPYDDF VYAAAWPLTF GTAFSTLYDF KKDWTSDSKV LVIGASTSVS 180
  181 YAFVHIAKNY FNIGTVVGIC SKNSIERNKK LGYDYLVPYD EGSIVENVKK LKQSVLENDK 240
  241 FDMIFDSVGN HDFFPVIDQF LKPKAKNSFY VTIAGNNKAD YKNISWRDFV SLSSILKAIN 300
  301 PFKKYNWRFG HPYPPNNFIE VGNEMIKKGT YKPPIDSVYE FDQYKEAIDR LMSNRAKGKV 360
  361 VVKMK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YIM1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..131] PSI-BLAST 68.0 Alcohol dehydrogenase
    2 View Details [132..151]
    [302..365]    		 PSI-BLAST 68.0 Alcohol dehydrogenase
    3 View Details [152..301] PSI-BLAST 68.0 Alcohol dehydrogenase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity
    		•  2.38343643417648 bayes_pls_golite062009
  • binding
    		•  2.29520443217747 bayes_pls_golite062009
  • protein binding
    		•  1.35579823286173 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.30535930879645 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  1.22416351603098 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.22202241547461 bayes_pls_golite062009
  • chaperone binding
    		•  1.19079350615542 bayes_pls_golite062009
  • DNA binding
    		•  1.02274180655721 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.955628854752953 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  0.905392379451071 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.901776352952123 bayes_pls_golite062009
  • alcohol dehydrogenase (NAD) activity
    		•  0.861534636764975 bayes_pls_golite062009
  • transporter activity
    		•  0.793769336118517 bayes_pls_golite062009
  • structural molecule activity
    		•  0.75267483298133 bayes_pls_golite062009
  • ligase activity
    		•  0.742884668104576 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.635891484075352 bayes_pls_golite062009
  • alcohol dehydrogenase activity, zinc-dependent
    		•  0.558610278939188 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.555188550031886 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  0.51503848775098 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.410307505174239 bayes_pls_golite062009
  • transcription factor activity
    		•  0.368443846770004 bayes_pls_golite062009
  • hydrolase activity
    		•  0.358696225508357 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.29802814097478 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  0.261132005311306 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.239024094835991 bayes_pls_golite062009
  • catalytic activity
    		•  0.217171374336363 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.212092278332619 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.113340150368917 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0696058100530442 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0591634687578807 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0560606007580392 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle