Protein Overview: YIP1

General Information:
Name(s) found:	YIP1 / YGR172C [SGD]
Description(s) found: Found 27 descriptions. SHOW ALL	Integral membrane protein required for the biogenesis of ER-derived COPII transport vesicles; interacts with Yif1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles [SGD]
Organism:	Saccharomyces cerevisiae
Length:	248 amino acids
Gene Ontology:
Cellular Component:	endoplasmic reticulum membrane [IDA ] integral to Golgi membrane [IDA] ER to Golgi transport vesicle [IDA][IPI]
Biological Process:	ER to Golgi vesicle-mediated transport [IMP] vesicle-mediated transport [IMP] vesicle fusion with Golgi apparatus [IMP]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFYNTSNNA NNGGGFYQPS AQFAVPQGSM SFQNTVGSSN TGNDNNLGVA PDPLPVGILH  60
   61 ALSTKGYPHE PPLLEEIGIN FDHIITKTKM VLIPIRFGSG VPQEILNDSD LAGPLIFFLL 120
  121 FGLFLLMAGK VHFGYIYGVA LFGTISLHNL SKLMSNNDTS TQTNLQFFNT ASILGYCFLP 180
  181 LCFLSLLGIF HGLNNTTGYV VSVLFVIWST WTSSGFLNSL LQLQNARLLI AYPLLIFYSV 240
  241 FALMVIFV

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Qiu et al. (2008)		SVP26 YIP1 YOS1

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	SRO77	YIP1	2	Drees BL, et al. (2001)
View Screen	SST2	YIP1	2	Unpublished Fields Lab Data

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..107]	MSA	1.026991	View MSA. No confident structure predictions are available.
2	View Details	[108..248]	MSA	2.026997	View MSA. No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

[View Details]

Source: Reynolds et al. 2008. Manuscript submitted

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2