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View Structure Prediction Details

Protein: YIP1
Organism: Saccharomyces cerevisiae
Length: 248 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIP1.

Description E-value Query
Range
Subject
Range
YIP1_YEAST - Protein transport protein YIP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIP1 PE=1...
YIP1 - Integral membrane protein required for the biogenesis of ER-derived COPII transport vesicles; intera...
2.0E-70 [1..248] [1..248]
YIPF7_MOUSE - Protein YIPF7 OS=Mus musculus GN=Yipf7 PE=2 SV=1
1.0E-62 [5..247] [26..254]
YIP1_SCHPO - Protein transport protein yip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yip1 PE=3 S...
SPCC61.04c - Rab GTPase binding
2.0E-57 [1..247] [1..225]
gi|15231678, gi|... - gi|7669950|emb|CAB89237.1| putative protein [Arabidopsis thaliana], gi|15231678|ref|NP_190844.1| int...
9.0E-50 [7..247] [18..257]
CE14456 - WBGene00012208 Yeast YIP1 protein like status:Partially_confirmed TR:O02335 protein_id:CAB03470.1
7.0E-47 [70..246] [109..279]
gi|114576891 - gi|114576891|ref|XP_001164632.1| PREDICTED: similar to Yip1 domain family, member 4 isoform 3 [Pan t...
gi|117645860 - gi|117645860|emb|CAL38397.1| hypothetical protein [synthetic construct]
YIPF4 - Yip1 domain family, member 4
4.0E-44 [19..241] [6..237]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFYNTSNNA NNGGGFYQPS AQFAVPQGSM SFQNTVGSSN TGNDNNLGVA PDPLPVGILH  60
   61 ALSTKGYPHE PPLLEEIGIN FDHIITKTKM VLIPIRFGSG VPQEILN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [108-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSDLAGPLIF FLLFGLFLLM AGKVHFGYIY GVALFGTISL HNLSKLMSNN DTSTQTNLQF  60
   61 FNTASILGYC FLPLCFLSLL GIFHGLNNTT GYVVSVLFVI WSTWTSSGFL NSLLQLQNAR 120
  121 LLIAYPLLIF YSVFALMVIF V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle