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Protein Overview: YCR016W

General Information:
Name(s) found: YCR016W [SGD]
Description(s) found:
Found 23 descriptions.
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  • Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus and nucleus; predicted to be involved in ribosome biogenesis [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 290 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: ribosome biogenesis [RCALink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENHVPAWK RIALKRQTIS SGDESKEKGQ SNLIDDDPLN ITTHLSTGNL TKKEKKRIIN  60
   61 GESKSSTKKG KRVSKPGTKK KEKLSKDEKN SKKNKILKDQ LRYLIEFFRT KSESKFPTGI 120
  121 LELESVKENY GDSLIKDEPS ESGVVEVWKF SKQKQNWLIK HFFNLDEIPS VYNDLLLLYF 180
  181 RDLQGKSKEE LISKCKGKLK QWNDYVEDQE TKIKALIAED KASEPINGEE KEEGEKDGNA 240
  241 EQGKQKEVQD EQEEVQMPNK ELVQRSLKLL EIWKNDDSEQ IELKNFFVDV

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) RPF2 YCR016W
    View Details Krogan NJ, et al. (2006) COQ10 DBP3 DSE4 GAR1 KRI1 KRR1 NHP2 NOP10 NOP6 YCR016W YDR381C-A
    View Details Qiu et al. (2008) NUG1 YCR016W

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YCR016W and NOP56 Huh WK, et al. (2003)
    View Data YCR016W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] MSA 2.003958 View MSA. No confident structure predictions are available.
    2 View Details [227..290] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle