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Protein Overview: gi|61362363, gi|...

General Information:
Name(s) found: gi|61362363 [NCBI NR]
gi|61362358 [NCBI NR]
Description(s) found:
Found 3 descriptions.
SHOW ALL
  • gi|61362363|gb|AAX42207.1| tubulin beta 4 [synthetic construct] [NCBI NR]
  • gi|61362358|gb|AAX42206.1| tubulin beta 4 [synthetic construct] [NCBI NR]
    • Organism: synthetic construct
    Length: 797 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVQGSQRRL LGSLNSTPTA IPQLGLAANQ TGARCLEVSI SDGLFLSLGL VSLVENALVV  60
   61 ATIAKNRNLH SPMYCFICCL ALSDLLVSGS NVLETAVILL LEAGALVARA AVLQQLDNVI 120
  121 DVITCSSMLS SLCFLGAIAV DRYISIFYAL RYHSIVTLPR ARRAVAAIWV ASVVFSTLFI 180
  181 AYYDHVAVLL CLVVFFLAML VLMAVLYVHM LARACQHAQG IARLHKRQRP VHQGFGLKGA 240
  241 VTLTILLGIF FLCWGPFFLH LTLIVLCPEH PTCGCIFKNF NLFLALIICN AIIDPLIYAF 300
  301 HSQELRRTLK EVLTCSCSQD RALVSWDVKS LGGSVCQELL PQQPQEKGLC DQKASSTALQ 360
  361 RLLQKEFWEV ISDEHGIDPS GNYVGDSDLQ LERISVYYNE ASSHKYVPRA ILVDLEPGTM 420
  421 DSVRSGAFGH LFRPDNFIFG QSGAGNNWAK GHYTEGAELV DSVLDVVRKE CENCDCLQGF 480
  481 QLTHSLGGGT GSGMGTLLIS KVREEYPDRI MNTFSVVPSP KVSDTVVEPY NATLSIHQLV 540
  541 ENTDETYCID NEALYDICFR TLKLATPTYG DLNHLVSATM SGVTTSLRFP GQLNADLRKL 600
  601 AVNMVPFPRL HFFMPGFAPL TARGSQQYRA LTVPELTQQM FDAKNMMAAC DPRHGRYLTV 660
  661 ATVFRGRMSM KEVDEQMLAI QSKNSSYFVE WIPNNVKVAV CDIPPRGLKM SSTFIGNSTA 720
  721 IQELFKRISE QFTAMFRRKA FLHWYTGEGM DEMEFTEAES NMNDLVSEYQ QYQDATAEEE 780
  781 GEMYEDDEEE SEAQGPK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..339] PSI-BLAST 52.522879 Rhodopsin
    2 View Details [340..797] PSI-BLAST 170.0 Tubulin:stathmin-like domain complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • G-protein coupled receptor activity
    		•  8.71814901383196 bayes_pls_golite062009
  • receptor activity
    		•  7.06055966221158 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  7.01539599282724 bayes_pls_golite062009
  • peptide receptor activity, G-protein coupled
    		•  6.12541205240173 bayes_pls_golite062009
  • molecular transducer activity
    		•  6.05267963238754 bayes_pls_golite062009
  • signal transducer activity
    		•  6.05267963238754 bayes_pls_golite062009
  • peptide receptor activity
    		•  6.04856799440486 bayes_pls_golite062009
  • neuropeptide binding
    		•  5.46057090687513 bayes_pls_golite062009
  • neuropeptide receptor activity
    		•  5.46057090687513 bayes_pls_golite062009
  • neurotransmitter receptor activity
    		•  5.35616101960681 bayes_pls_golite062009
  • neurotransmitter binding
    		•  5.22191968259492 bayes_pls_golite062009
  • photoreceptor activity
    		•  4.93686830751267 bayes_pls_golite062009
  • peptide binding
    		•  4.8780653006611 bayes_pls_golite062009
  • G-protein coupled photoreceptor activity
    		•  4.79156570848004 bayes_pls_golite062009
  • G-protein coupled amine receptor activity
    		•  3.93706716877289 bayes_pls_golite062009
  • olfactory receptor activity
    		•  3.47550162115408 bayes_pls_golite062009
  • opioid receptor activity
    		•  3.22729840146067 bayes_pls_golite062009
  • binding
    		•  2.79468187106818 bayes_pls_golite062009
  • tachykinin receptor activity
    		•  2.4986802041908 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.17253122279743 bayes_pls_golite062009
  • growth hormone secretagogue receptor activity
    		•  2.12517933332362 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.9083697316027 bayes_pls_golite062009
  • 11-cis retinal binding
    		•  1.87079306077199 bayes_pls_golite062009
  • mu-opioid receptor activity
    		•  1.85643264850844 bayes_pls_golite062009
  • somatostatin receptor activity
    		•  1.6896410144458 bayes_pls_golite062009
  • protein-hormone receptor activity
    		•  1.64635966454507 bayes_pls_golite062009
  • protein binding
    		•  1.56689457520546 bayes_pls_golite062009
  • actin binding
    		•  1.53432028087227 bayes_pls_golite062009
  • adrenoceptor activity
    		•  1.41816467611311 bayes_pls_golite062009
  • transporter activity
    		•  1.29312621296064 bayes_pls_golite062009
  • amine binding
    		•  1.15102749202013 bayes_pls_golite062009
  • melatonin receptor activity
    		•  1.075988883638 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.07260547988411 bayes_pls_golite062009
  • norepinephrine binding
    		•  0.91306142065396 bayes_pls_golite062009
  • beta2-adrenergic receptor activity
    		•  0.91306142065396 bayes_pls_golite062009
  • beta-adrenergic receptor activity
    		•  0.91306142065396 bayes_pls_golite062009
  • galanin receptor activity
    		•  0.89794875509843 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.803790338332977 bayes_pls_golite062009
  • neuropeptide Y receptor activity
    		•  0.787828595997633 bayes_pls_golite062009
  • melanin-concentrating hormone receptor activity
    		•  0.68517896633151 bayes_pls_golite062009
  • allatostatin receptor activity
    		•  0.57306858576999 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.54988113115303 bayes_pls_golite062009
  • growth hormone-releasing hormone receptor activity
    		•  0.54640132962575 bayes_pls_golite062009
  • serotonin receptor activity
    		•  0.50108422883067 bayes_pls_golite062009
  • epinephrine binding
    		•  0.461468741834171 bayes_pls_golite062009
  • vitamin binding
    		•  0.4299798536797 bayes_pls_golite062009
  • pancreatic polypeptide receptor activity
    		•  0.344419397658879 bayes_pls_golite062009
  • peptide YY receptor activity
    		•  0.341945374420772 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.320380030702672 bayes_pls_golite062009
  • transferase activity
    		•  0.317278477863072 bayes_pls_golite062009
  • kinase activity
    		•  0.295597002136203 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.249956975851186 bayes_pls_golite062009
  • retinal binding
    		•  0.23973229872245 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.221400419532118 bayes_pls_golite062009
  • gated channel activity
    		•  0.121740107050698 bayes_pls_golite062009
  • protein kinase activity
    		•  0.093744276691932 bayes_pls_golite062009
    2
    Term Confidence Notes
  • structural constituent of cytoskeleton
    		•  4.04224160177678 bayes_pls_golite062009
  • structural molecule activity
    		•  3.32779015200848 bayes_pls_golite062009
  • tubulin binding
    		•  2.4432045213385 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.24606230377981 bayes_pls_golite062009
  • binding
    		•  2.00508289492248 bayes_pls_golite062009
  • GTPase activity
    		•  1.87512665946067 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.77500173070686 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.7017047947554 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.68267378160702 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.68038087466376 bayes_pls_golite062009
  • protein binding
    		•  1.60795853516357 bayes_pls_golite062009
  • MHC class I protein binding
    		•  1.46574865275013 bayes_pls_golite062009
  • gamma-tubulin binding
    		•  1.02742779831447 bayes_pls_golite062009
  • hydrolase activity
    		•  0.502038132260603 bayes_pls_golite062009
  • receptor binding
    		•  0.00945891657658993 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle