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Protein Overview: gi|24346555, gi|...

General Information:
Name(s) found: gi|24372543 [NCBI NR]
gi|24346555 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24372543|ref|NP_716585.1| alkyl hydroperoxide reductase, F subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346555|gb|AAN54030.1|AE015540_10 alkyl hydroperoxide reductase, F subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 527 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: alkyl hydroperoxide reductase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDANLKNQL QTYLQNLKRP VELVVSADES KKSQELKSLV NDIVSLSTFV SLKEAQGQRT  60
   61 PAMTVVNPAL NTQISFAGLP MGHEFTSLVL ALLHSGGHPI KLSDDIIEQI RNLPGKYEFE 120
  121 TYVSLTCQNC PDVVQALNMM AAINPNITNV MIDGALFQDE VASRNIMAVP SVYLNGEVFA 180
  181 AGRISIGEIL NKLDTGAASR KAEELSQKAP YEVLVVGGGP AGAAAAIYAA RKGLRTGIVA 240
  241 DKFGGQVAET VGIENFISVK ATEGPKLVAN LEAHVRDYEV DIMDNQKAVK LASDGLFELE 300
  301 LASGAKLRSR TVLLATGARW REMNVPGEKE YRGKGVAYCP HCDGPLFKGK RVAVIGGGNS 360
  361 GIEAAIDLAN IVEHVTVLEF DSKLRADDVL QRKAASMGNI KIITQAMTTE VTGDGTRVNG 420
  421 LNYTDRATGE SHHIALAGIF VQIGLVPNAE WLKGTVDLTP RGEIIVDERG QTSVPGVFAA 480
  481 GDVTNSPYKQ IIIAMGSGAN ASLGAFDYLI RHSDDSTETK TTDTKAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..527] PSI-BLAST 95.221849 Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains; Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • alkyl hydroperoxide reductase activity
    		•  4.29610283853788 bayes_pls_golite062009
  • antioxidant activity
    		•  3.8464796631544 bayes_pls_golite062009
  • oxidoreductase activity, acting on peroxide as acceptor
    		•  3.43831566988273 bayes_pls_golite062009
  • peroxidase activity
    		•  3.43831566988273 bayes_pls_golite062009
  • glutathione peroxidase activity
    		•  2.56524997297011 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors
    		•  2.23310780102446 bayes_pls_golite062009
  • peroxiredoxin activity
    		•  2.12777217096121 bayes_pls_golite062009
  • thioredoxin peroxidase activity
    		•  1.96134566495756 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.90357236955554 bayes_pls_golite062009
  • selenium binding
    		•  1.67987004910726 bayes_pls_golite062009
  • protein disulfide oxidoreductase activity
    		•  1.47769936616412 bayes_pls_golite062009
  • disulfide oxidoreductase activity
    		•  1.32811008894503 bayes_pls_golite062009
  • binding
    		•  1.25802922431343 bayes_pls_golite062009
  • transporter activity
    		•  0.775169788737542 bayes_pls_golite062009
  • dihydrolipoyl dehydrogenase activity
    		•  0.69501605197281 bayes_pls_golite062009
  • catalytic activity
    		•  0.672192331361968 bayes_pls_golite062009
  • hydrolase activity
    		•  0.517269321619613 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.516718923379533 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.198172638251773 bayes_pls_golite062009
  • oxygen-dependent protoporphyrinogen oxidase activity
    		•  0.1498172520052 bayes_pls_golite062009
  • protein binding
    		•  0.134341907247724 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle