YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|194407250, gi...

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

No microscopy data found in the PDR for this protein.

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..589] PSI-BLAST 1000.0 AMINO TERMINAL 67KDA DOMAIN OF ESCHERICHIA COLI DNA TOPOISOMERASE I (RESIDUES 2-590 OF MATURE PROTEIN) CLONING ARTIFACT ADDS TWO RESIDUES TO THE AMINO-TERMINUS WHICH WERE NOT OBSERVED IN THE EXPERIMENTAL ELECTRON DENSITY (GLY-2, SER-1).
2 View Details [590..667] FFAS03 1.8 No description for 2gaiA was found.
3 View Details [668..735] PSI-BLAST 11.045757 No description for 2yt9A was found.
4 View Details [736..865] PSI-BLAST 21.154902 C-TERMINAL DOMAIN OF ESCHERICHIA COLI TOPOISOMERASE I

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • DNA topoisomerase activity
  • 9.28485802237784 bayes_pls_golite062009
  • DNA topoisomerase type I activity
  • 6.20416707013367 bayes_pls_golite062009
  • isomerase activity
  • 5.61256457337998 bayes_pls_golite062009
  • nucleic acid binding
  • 3.37048693883188 bayes_pls_golite062009
  • DNA binding
  • 3.2732257752308 bayes_pls_golite062009
  • binding
  • 3.07618319631815 bayes_pls_golite062009
  • catalytic activity
  • 1.50449367975676 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • DNA primase activity
  • 3.07516234808151 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 2.45202527906689 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 1.79551532005706 bayes_pls_golite062009
  • RNA polymerase activity
  • 1.79551532005706 bayes_pls_golite062009
  • transcription regulator activity
  • 0.977281907364794 bayes_pls_golite062009
  • binding
  • 0.827218793613898 bayes_pls_golite062009
  • catalytic activity
  • 0.434839928397784 bayes_pls_golite062009
  • nucleic acid binding
  • 0.33473177315365 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 0.0647934199260571 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle