| Protein: | Xpd-PA |
| Organism: | Drosophila melanogaster |
| Length: | 769 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Xpd-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
622.0 | [0..1] | [760..1] |
|
Region A: Residues: [1-324] |
1 11 21 31 41 51
| | | | | |
1 MKLSVDGLLV YFPYEYIYPE QYAYMLELKR SLDAKGHCLL EMPSGTGKTA TLLSLIVAYM 60
61 VEHPETVRKL IYCSRTVPEI EKVIAELQNL MVYYERHCPN PPPFTGLVLS SRKNMCIHPE 120
121 VSKEREGKAV DGKCYGLTAS YIRERHEMDT ETPICQYFEG FSLEGKESTL PVGVYSIDDL 180
181 KEYGRSRNWC PYFLARYAIA HAHIVVYSYH YLLDPKIAQV VSKEMSRESC VVFDEAHNID 240
241 NVCIDSMSVK INRRTVERST NALNHLTKLV QDIREEDTNR LNEEYQRMVQ GLKDASVQRD 300
301 TDMILANPVL PNDVLTEVVP GNIR
|
| Detection Method: |  |
| Confidence: | 6.69897 |
| Match: | 1xtjA |
| Description: | structure of human UAP56 in complex with ADP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.47805400577115 | bayes_pls_golite062009 |
| dATP binding | 3.90236137621968 | bayes_pls_golite062009 |
| adenyl deoxyribonucleotide binding | 2.90098016780049 | bayes_pls_golite062009 |
| purine deoxyribonucleotide binding | 2.90098016780049 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 2.72222787956584 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 2.60873257753475 | bayes_pls_golite062009 |
| hydrolase activity | 2.55157966585974 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| endonuclease activity | 1.96689197136388 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| microtubule motor activity | 1.6537049553461 | bayes_pls_golite062009 |
| RNA helicase activity | 1.63960194106079 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.61735400124552 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.60404584546501 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 1.29640539057136 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| protein binding | 1.22129154759482 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| DNA clamp loader activity | 1.12431517057397 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.11383295816593 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| transcription activator activity | 0.889929694023098 | bayes_pls_golite062009 |
| transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.595694294246159 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.543891899378373 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.394186699348086 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.360529478474946 | bayes_pls_golite062009 |
| nucleotide binding | 0.354857598792381 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.35235724478784 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.352298062690593 | bayes_pls_golite062009 |
| mismatched DNA binding | 0.31144582840038 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.283577486331079 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.26252931460003 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.243902356228423 | bayes_pls_golite062009 |
| exodeoxyribonuclease V activity | 0.185603938981231 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.181509771587324 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
|
Region A: Residues: [325-769] |
1 11 21 31 41 51
| | | | | |
1 NADHFLSFLR RFIEYIKTRL RVHHVVQESP AGFLKDISSK ICIERKPLRF CAERLSSLLR 60
61 TLEISDLTEY GALTLITHFA TLVSTYTKGF TIIIEPFDDK TPTVSNPILH FSCLDSSIAM 120
121 APVFSRFQTV VITSGTLSPM DMYPKILDFD PVVMSSFTMT LARPCLLPMI VSKGNDQVTI 180
181 SSKFETREDT AVIRNYGQLL VEVAKTVPDG IVCFFTSYLY LESVVASWYD QGIVDTLLRY 240
241 KLLFIETQDN AETSYALMNY VKACDCGRGA VLLAVARGKV SEGVDFDHHY GRAVLMFGIP 300
301 YVYTQSRILK ARLDYLRDQF QIRENDFLTF DAMRHAAQCV GRALRGKTDY GIMIFADKRF 360
361 SRHDKRSRLP KWIQEHLVDS FCNLSTEEAV QLARRWLRRM AQPFTREDQL GISLLTLAQL 420
421 ENMEQEKLER QAQGKQGVGG EVQEL
|
| Detection Method: | |
| Confidence: | 1.01 |
| Match: | 2ocaA |
| Description: | No description for 2ocaA was found. |
