Protein: | PRIA_ECOLI |
Organism: | Escherichia coli |
Length: | 732 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRIA_ECOLI.
Description | E-value | Query Range |
Subject Range |
|
566.0 | [0..1] | [732..1] |
|
566.0 | [0..1] | [732..1] |
|
565.0 | [0..1] | [732..1] |
|
564.0 | [0..1] | [732..1] |
|
559.0 | [0..1] | [732..1] |
|
558.0 | [0..1] | [732..1] |
|
557.0 | [0..1] | [732..1] |
|
557.0 | [0..1] | [732..1] |
|
557.0 | [0..1] | [732..1] |
Region A: Residues: [1-172] |
1 11 21 31 41 51 | | | | | | 1 MPVAHVALPV PLPRTFDYLL PEGMTVKAGC RVRVPFGKQQ ERIGIVVSVS DASELPLNEL 60 61 KAVVEVLDSE PVFTHSVWRL LLWAADYYHH PIGDVLFHAL PILLRQGRPA ANAPMWYWFA 120 121 TEQGQAVDLN SLKRSPKQQQ ALAALRQGKI WRDQVATLEF NDAALQALRK KG |
Detection Method: | |
Confidence: | 25.0 |
Match: | 2d7eA |
Description: | No description for 2d7eA was found. |
Region A: Residues: [173-332] |
1 11 21 31 41 51 | | | | | | 1 LCDLASETPE FSDWRTNYAV SGERLRLNTE QATAVGAIHS AADTFSAWLL AGVTGSGKTE 60 61 VYLSVLENVL AQGKQALVMV PEIGLTPQTI ARFRERFNAP VEVLHSGLND SERLSAWLKA 120 121 KNGEAAIVIG TRSALFTPFK NLGVIVIDEE HDSSYKQQEG |
Detection Method: | |
Confidence: | 5.045757 |
Match: | 1gl9B |
Description: | Helicase-like "domain" of reverse gyrase; Topoisomerase "domain" of reverse gyrase |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
DNA clamp loader activity | 4.91429252297969 | bayes_pls_golite062009 |
protein-DNA loading ATPase activity | 4.80695929076807 | bayes_pls_golite062009 |
binding | 3.20817609308002 | bayes_pls_golite062009 |
DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
nucleic acid binding | 2.2502397577006 | bayes_pls_golite062009 |
transcription regulator activity | 2.19474222771129 | bayes_pls_golite062009 |
pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
DNA binding | 2.03222535159295 | bayes_pls_golite062009 |
ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
DNA-directed DNA polymerase activity | 0.971476020912368 | bayes_pls_golite062009 |
DNA polymerase activity | 0.928091843881235 | bayes_pls_golite062009 |
transcription factor activity | 0.802855430913287 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.782430219754236 | bayes_pls_golite062009 |
double-stranded DNA binding | 0.6071273686445 | bayes_pls_golite062009 |
RNA helicase activity | 0.18426050934025 | bayes_pls_golite062009 |
nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
RNA-dependent ATPase activity | 0.14606996093053 | bayes_pls_golite062009 |
ATP-dependent RNA helicase activity | 0.13050483816765 | bayes_pls_golite062009 |
nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |
Region A: Residues: [333-732] |
1 11 21 31 41 51 | | | | | | 1 WRYHARDLAV YRAHSEQIPI ILGSATPALE TLCNVQQKKY RLLRLTRRAG NARPAIQHVL 60 61 DLKGQKVQAG LAPALITRMR QHLQADNQVI LFLNRRGFAP ALLCHDCGWI AECPRCDHYY 120 121 TLHQAQHHLR CHHCDSQRPV PRQCPSCGST HLVPVGLGTE QLEQTLAPLF PGVPISRIDR 180 181 DTTSRKGALE QQLAEVHRGG ARILIGTQML AKGHHFPDVT LVALLDVDGA LFSADFRSAE 240 241 RFAQLYTQVA GRAGRAGKQG EVVLQTHHPE HPLLQTLLYK GYDAFAEQAL AERRMMQLPP 300 301 WTSHVIVRAE DHNNQHAPLF LQQLRNLILS SPLADEKLWV LGPVPALAPK RGGRWRWQIL 360 361 LQHPSRVRLQ HIINGTLALI NTIPDSRKVK WVLDVDPIEG |
Detection Method: | |
Confidence: | 15.154902 |
Match: | 1d9zA |
Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
DNA clamp loader activity | 4.91429252297969 | bayes_pls_golite062009 |
protein-DNA loading ATPase activity | 4.80695929076807 | bayes_pls_golite062009 |
binding | 3.20817609308002 | bayes_pls_golite062009 |
DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
nucleic acid binding | 2.2502397577006 | bayes_pls_golite062009 |
transcription regulator activity | 2.19474222771129 | bayes_pls_golite062009 |
pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
DNA binding | 2.03222535159295 | bayes_pls_golite062009 |
ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
DNA-directed DNA polymerase activity | 0.971476020912368 | bayes_pls_golite062009 |
DNA polymerase activity | 0.928091843881235 | bayes_pls_golite062009 |
transcription factor activity | 0.802855430913287 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.782430219754236 | bayes_pls_golite062009 |
double-stranded DNA binding | 0.6071273686445 | bayes_pls_golite062009 |
RNA helicase activity | 0.18426050934025 | bayes_pls_golite062009 |
nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
RNA-dependent ATPase activity | 0.14606996093053 | bayes_pls_golite062009 |
ATP-dependent RNA helicase activity | 0.13050483816765 | bayes_pls_golite062009 |
nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |