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View Structure Prediction Details

Protein: FMT1
Organism: Saccharomyces cerevisiae
Length: 401 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMT1.

Description E-value Query
Range
Subject
Range
FMT1 - Methionyl-tRNA formyltransferase, catalyzes the formylation of initiator Met-tRNA in mitochondria; p...
FMT_YEAST - Methionyl-tRNA formyltransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...
9.0E-81 [1..401] [1..401]
gi|1772500|emb|C... - Met-tRNAi formyl transferase [Bacillus subtilis]
gi|1772500 - gi|1772500|emb|CAA71350.1| Met-tRNAi formyl transferase [Bacillus subtilis]
4.0E-76 [31..396] [3..311]
FMT_BACSU - Methionyl-tRNA formyltransferase OS=Bacillus subtilis GN=fmt PE=3 SV=2
FMT_BACSU - Methionyl-tRNA formyltransferase OS=Bacillus subtilis (strain 168) GN=fmt PE=3 SV=2
gi|221318697 - gi|221318697|ref|ZP_03599991.1| methionyl-tRNA formyltransferase [Bacillus subtilis subsp. subtilis ...
gi|221313773 - gi|221313773|ref|ZP_03595578.1| methionyl-tRNA formyltransferase [Bacillus subtilis subsp. subtilis ...
gi|221322968 - gi|221322968|ref|ZP_03604262.1| methionyl-tRNA formyltransferase [Bacillus subtilis subsp. subtilis ...
5.0E-76 [31..396] [3..311]
gi|42630886 - gi|42630886|ref|ZP_00156424.1| COG0223: Methionyl-tRNA formyltransferase [Haemophilus influenzae R28...
1.0E-74 [27..395] [1..317]
FMT_ECODH - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=fmt PE=3 SV=1
FMT_ECOHS - Methionyl-tRNA formyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=fmt PE=3 SV=1
gi|85676754, gi|... - gi|89110723|ref|AP_004503.1| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase [E...
EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer...
FMT_ECOLI - Methionyl-tRNA formyltransferase (EC 2.1.2.9) - Escherichia coli
EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer...
gi|124498111, gi... - gi|124532221|ref|ZP_01702159.1| methionyl-tRNA formyltransferase [Escherichia coli B], gi|124498111|...
gi|194439996, gi... - gi|83584646|ref|ZP_00923313.1| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli 101-1], g...
FMT_ECOLC - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fmt P...
FMT_ECOBW - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fmt PE=3 SV=1
gi|242378814, gi... - gi|251786541|ref|YP_003000845.1| hypothetical protein B21_03089 [Escherichia coli BL21], gi|24237881...
gi|253979272, gi... - gi|254289965|ref|YP_003055713.1| methionyl-tRNA formyltransferase [Escherichia coli BL21(DE3)], gi|2...
gi|254038448, gi... - gi|254038448|ref|ZP_04872504.1| methionyl-tRNA formyltransferase [Escherichia sp. 1_1_43], gi|226838...
gi|253975116, gi... - gi|254163215|ref|YP_003046323.1| methionyl-tRNA formyltransferase [Escherichia coli B str. REL606], ...
1.0E-74 [26..395] [1..314]
gi|254795224, gi... - gi|254795224|ref|YP_003080061.1| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferas...
FMT_ECO57 - Methionyl-tRNA formyltransferase OS=Escherichia coli O157:H7 GN=fmt PE=3 SV=3
gi|25320684, gi|... - pir||E85993 hypothetical protein fmt [imported] - Escherichia coli (strain O157:H7, substrain EDL93...
gi|168758515, gi... - gi|189354684|gb|EDU73103.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4401],...
gi|15803815, gi|... - gi|15803815|ref|NP_289849.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 EDL933], gi|...
gi|217320751, gi... - gi|217324530|ref|ZP_03440614.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. TW14...
FMT_ECO5E - Methionyl-tRNA formyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fmt PE=3 SV=1
gi|208818701, gi... - gi|208818701|ref|ZP_03259021.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40...
gi|208733665, gi... - gi|208812388|ref|ZP_03253717.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40...
gi|188998872, gi... - gi|188998872|gb|EDU67858.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4076],...
gi|168777855, gi... - gi|187767010|gb|EDU30854.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4196],...
gi|189361852, gi... - gi|189361852|gb|EDU80271.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4486],...
gi|189365130, gi... - gi|189365130|gb|EDU83546.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4501],...
gi|208807557, gi... - gi|208807557|ref|ZP_03249894.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC42...
gi|195939835 - gi|195939835|ref|ZP_03085217.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40...
gi|15833407, gi|... - gi|15833407|ref|NP_312180.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. Sakai],...
gi|168802717, gi... - gi|189375352|gb|EDU93768.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC508], ...
gi|189374012, gi... - gi|189374012|gb|EDU92428.1| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC869], ...
2.0E-74 [26..395] [1..314]
gi|24114565, gi|... - gi|24114565|ref|NP_709075.1| methionyl-tRNA formyltransferase [Shigella flexneri 2a str. 301], gi|24...
FMT_SHIF8 - Methionyl-tRNA formyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=fmt PE=3 SV=1
gi|30064609, gi|... - gi|30064609|ref|NP_838780.1| methionyl-tRNA formyltransferase [Shigella flexneri 2a str. 2457T], gi|...
FMT_SHIFL - Methionyl-tRNA formyltransferase OS=Shigella flexneri GN=fmt PE=3 SV=1
3.0E-74 [26..395] [1..314]
FMT_ECOLI - (P23882) Methionyl-tRNA formyltransferase (EC 2.1.2.9)
7.0E-74 [27..395] [1..313]

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Predicted Domain #1
Region A:
Residues: [1-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKMRRITPT RLLFTCRYIS NNASPPVQPL NVLFFGSDTF SNFSLQALNE LRQNNGSCGI  60
   61 VDNIQVVTRS PKWCGRQKSI LKYPPIFDMA EKLQLPRPIT CDTKQEMLAL SKLTPSRQGN 120
  121 PENDGSGAPF NAIIAVSFGK LIPGDLIRAV PLALNVHPSL LPRHKGSAPI QRALLEGDTY 180
  181 TGVTIQTLHP DRFDHGAIVA QTEPLAIATM LSKGRVNDST ADFNSEGLPR RTAILMDQLG 240
  241 ALGAQLLGQT LRERLYLPQN RVQAPTAYKP SYAHRITTED KRIHWARDSA AELLNKLETL 300
  301 GPLHAFKEAT AARKDAQNSV LKRILFHECK VMRDARLDNG SKPGMFKYDD IKDCILVTCR 360
  361 GNLLLCVSRL QFEGFAVERA GQFMARLRKR CGALSEKLVF L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.0
Match: 1fmtA_
Description: Methionyl-tRNAfmet formyltransferase, C-terminal domain; Methionyl-tRNAfmet formyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
methionyl-tRNA formyltransferase activity 5.51013755462273 bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity 5.19882604023997 bayes_pls_golite062009
ligase activity 2.41579019065074 bayes_pls_golite062009
methyltransferase activity 2.27572765999587 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 2.20102068445328 bayes_pls_golite062009
catalytic activity 2.16003793103722 bayes_pls_golite062009
glycine hydroxymethyltransferase activity 1.99841214906509 bayes_pls_golite062009
transferase activity 1.01502594768782 bayes_pls_golite062009
DNA N-glycosylase activity 0.809924940479886 bayes_pls_golite062009
binding 0.752059276178195 bayes_pls_golite062009
nucleic acid binding 0.698214709916015 bayes_pls_golite062009
DNA binding 0.421388681127685 bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity 0.0567687847434473 bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds 0.0124799003650303 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle